statistics_list: statistics_list helper function

In rBiasCorrection: Correct Bias in DNA Methylation Analyses

statistics_list helper function

Description

Internal function that converts the results_list (output of regression_utility()) into a data.table object.

Usage

statistics_list(resultlist, minmax = FALSE)

Arguments

resultlist	A list object. The results_list output of regression_utility().
minmax	A logical, indicating which equations are used for BiasCorrection (default: FALSE). If TRUE, equations are used that include the respective minima and maxima of the provided data.

Value

The function takes the 'resultslist' and converts it to a statistics list, which is basically a 'data.table' with the results of the hyperbolic and the cubic regression.

Examples

# define list object to save all data
rv <- list()
rv$minmax <- TRUE
rv$selection_method <- "RelError"
rv$sample_locus_name <- "Test"
rv$seed <- 1234

# define logfilename
logfilename <- paste0(tempdir(), "/log.txt")

# import experimental file
exp_type_1 <- rBiasCorrection::example.data_experimental
rv$fileimport_experimental <- exp_type_1$dat

# import calibration file
cal_type_1 <- rBiasCorrection::example.data_calibration
rv$fileimport_calibration <- cal_type_1$dat
rv$vec_cal <- cal_type_1$vec_cal

# perform regression
regression_results <- regression_utility(
  rv$fileimport_calibration,
  "Testlocus",
  locus_id = NULL,
  rv = rv,
  mode = NULL,
  logfilename,
  minmax = rv$minmax,
  seed = rv$seed
)

# extract regression results
rv$result_list <- regression_results$result_list

# get regression statistics
rv$reg_stats <- statistics_list(
  rv$result_list,
  minmax = rv$minmax
)

rBiasCorrection documentation built on June 21, 2022, 1:05 a.m.