EmbedDimension: Optimal embedding dimension

In rEDM: Empirical Dynamic Modeling ('EDM')

Optimal embedding dimension

Description

EmbedDimension uses Simplex to evaluate prediction accuracy as a function of embedding dimension.

Usage

EmbedDimension(pathIn = "./", dataFile = "", dataFrame = NULL, pathOut = "", 
  predictFile = "", lib = "", pred = "", maxE = 10, Tp = 1, tau = -1,
  exclusionRadius = 0, columns = "", target = "", embedded = FALSE,
  verbose = FALSE, validLib = vector(), numThreads = 4, showPlot = TRUE,
  noTime = FALSE)  

Arguments

pathIn	path to dataFile.
dataFile	.csv format data file name. The first column must be a time index or time values unless noTime is TRUE. The first row must be column names.
dataFrame	input data.frame. The first column must be a time index or time values unless noTime is TRUE. The columns must be named.
pathOut	path for predictFile containing output predictions.
predictFile	output file name.
lib	string or vector with start and stop indices of input data rows used to create the library from observations. Mulitple row index pairs can be specified with each pair defining the first and last rows of time series observation segments used to create the library.
pred	string with start and stop indices of input data rows used for predictions. A single contiguous range is supported.
maxE	maximum value of E to evalulate.
Tp	prediction horizon (number of time column rows).
tau	lag of time delay embedding specified as number of time column rows.
exclusionRadius	excludes vectors from the search space of nearest neighbors if their relative time index is within exclusionRadius.
columns	string of whitespace separated column name(s) in the input data used to create the library.
target	column name in the input data used for prediction.
embedded	logical specifying if the input data are embedded.
verbose	logical to produce additional console reporting.
validLib	logical vector the same length as the number of data rows. Any data row represented in this vector as FALSE, will not be included in the library.
numThreads	number of parallel threads for computation.
showPlot	logical to plot results.
noTime	logical to allow input data with no time column.

Value

A data.frame with columns E, rho.

Examples

data(TentMap)
E.rho = EmbedDimension( dataFrame = TentMap, lib = "1 100", pred = "201 500",
columns = "TentMap", target = "TentMap", showPlot = FALSE )

rEDM documentation built on Nov. 10, 2023, 5:08 p.m.