rMR-package: Importing Data from Loligo Systems Software Output,...

Description Details Author(s) References See Also

Description

Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (1989), and easy functions for converting between different units of barometric pressure.

Details

Package: rMR
Type: Package
Version: 1.0.5
Date: 2017-09-07
License: 3

Author(s)

Tyler L. Moulton

Maintainer: Tyler L. Moulton <[email protected]>

References

Benson, B.B., and Daniel Krause, Jr (1980). The concentration and isotopic fractionation of gases dissolved in freshwater in equilibrium with the atmosphere. 1. Oxygen: Limnology and Oceanography, vol. 25, no. 4, p. 662-671. doi: 10.4319/lo.1980.25.4.0662.

Gnaiger, Erich, and Hellmuth Forstner, eds. (2012). Polarographic oxygen sensors: Aquatic and physiological applications. Springer Science & Business Media. doi: 10.1007/978-3-642-81863-9.

Lumley, Thomas (2013). "biglm: bounded memory linear and generalized linear models". 0.9-1. https://CRAN.R-project.org/package=biglm.

McDonnell, Laura H., and Lauren J. Chapman (2016). "Effects of thermal increase on aerobic capacity and swim performance in a tropical inland fish." Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 199: 62-70. doi: 10.1016/j.cbpa.2016.05.018.

Mechtly, E. A. (1973). The International System of Units, Physical Constants and Conversion Factors. NASA SP-7012, Second Revision, National Aeronautics and Space Administration, Washington, D.C. https://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19730018242.pdf.

Roche, Dominique G., et al. (2013). "Finding the best estimates of metabolic rates in a coral reef fish." Journal of Experimental Biology 216.11: 2103-2110. doi: 10.1242/jeb.082925.

U.S. Geological Survey (2011). Change to solubility equations for oxygen in water: Office of Water Quality Technical Memorandum 2011.03, accessed July 15, 2011, at http://water.usgs.gov/admin/memo/QW/qw11.03.pdf.

Yeager, D. P. and Ultsch, G. R. (1989). Physiological regulation and conformation: a BASIC program for the determination of critical points. Physiological Zoology, 888-907. doi: 10.1086/physzool.62.4.30157935.

http://www.loligosystems.com/

See Also

biglm


rMR documentation built on Jan. 21, 2018, 5:01 p.m.