Description Usage Arguments Value Author(s)
View source: R/qtl_pheno_simu.R
A function to simulate phenotype values with multiple sources of variation controlled
1 2 3 4 5 6 7 8 9 | qtl_pheno_simu(
b_self,
b_nei,
eigenK_self,
eigenK_nei,
b_ratio = c(1, 1),
pveB,
pve
)
|
b_self |
A n x 1 genotype vector to design major additive genetic effect. |
b_nei |
A vector of an explanatory variable for neighbor effects |
eigenK_self |
Products of |
eigenK_nei |
Products of |
b_ratio |
Ratio for contributions of |
pveB |
Proportion of variance explained by genetic effects attributable to the fixed effects (i.e., b_.. vector). |
pve |
Proportion of variance explained by all genetic effects (i.e., b_.. and eigenK_..) |
A list of simulated phenotypes
y
Simulated phenotype values
beta_self
major self-genetic effects
beta_nei
major neighbor effects
sigma_self
self polygenic effects
sigma_nei
neighbor polygenic effects
epsilon
residuals
res_pveB
realized proportion of variation explained by major-effect genes
res_pve
realized proportion of variation explained by major-effect genes and polygenic effects
Eiji Yamamoto, and Yasuhiro Sato
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