analyzeFile: Analysis of a single corneal topography file
In rPACI: Placido Analysis of Corneal Irregularity

Description Usage Arguments Value Examples

Analyze a corneal topography file. This function combines together the three operations performed by the functions readFile, computePlacidoIndices, and plotSingleCornea. The result is a data.frame in the same format given by computePlacidoIndices.

More details about supported file formats can be found in vignette("topographersDataFormat", package = "rPACI"), and about using rPACI in vignette("packageUsage", package = "rPACI").

1	analyzeFile(path, drawplot = TRUE)

`path`	A corneal topography file, as exported by a Placido disk corneal topographer.
`drawplot`	An optional parameter indicating whether a plot of results should be displayed or not (by default, `TRUE`).

A data.frame containing the Placido irregularity indices as well as the diagnose, with a single row and columns:

`Diagnose`		A text label indicating the diagnose, according to the value of GLPI
`NBI`		The value of NBI index (in the range 0-100).
`GLPI`		The value of GLPI index (in the range 0-100).
`PI_1`		The value of PI_1 index (usually in the range 0-150).
`PI_2`		The value of PI_2 index (usually in the range 0-150).
`PI_3`		The value of PI_3 index (usually in the range 0-150).
`SL`		The value of SL index (usually in the range 0-150).
`AR_1`		The value of AR_1 index (usually in the range 0-150).
`AR_2`		The value of AR_2 index (usually in the range 0-150).
`AR_3`		The value of AR_3 index (usually in the range 0-150).
`AR_4`		The value of AR_4 index (usually in the range 0-150).
`AR_5`		The value of AR_5 index (usually in the range 0-150).

# Read the file, compute the indices and show results in one step with:
results = analyzeFile(system.file("extdata","N01.txt", package="rPACI"))

# The previous command is equivalent to:
dataset = readFile(system.file("extdata","N01.txt", package="rPACI"))
results = computePlacidoIndices(dataset)
# If drawplot=TRUE, then it also performs:
plotSingleCornea(dataset, results)