generateG: Transfer ped file to genotype matrix
In radmixture: Calculate Population Stratification
Description
Usage
Arguments
Value
Description
This function can be used to transfer a ped file to g matrix
Usage
1
generateG(rawped)
Arguments
rawped
A data.frame. Standard ped format. Genotype should be transferred to 1,2,3,4 from A,C,G,T. 0 represents missing.
'-','_','I','D' should be replaced by 0 by yourself.
Value
genotype matrix
radmixture documentation built on May 2, 2019, 6:11 a.m.
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Description Usage Arguments Value
Description
This function can be used to transfer a ped file to g matrix
Usage
1 | generateG(rawped)
|
Arguments
rawped |
A data.frame. Standard ped format. Genotype should be transferred to 1,2,3,4 from A,C,G,T. 0 represents missing. '-','_','I','D' should be replaced by 0 by yourself. |
Value
genotype matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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