initQF: Initialize Q and F
In radmixture: Calculate Population Stratification
Description
Usage
Arguments
Value
Description
This function could help you initialize Q and F matrix conveniently especially when
you intend to use supervised learning.
Usage
1
Arguments
g
genotype matrix
pop
A data.frame. If you intend to do supervised learning,
you must specify the ancestries of the reference individuals.
alpha
Parameter for dirichlet distribution.
Vector of shape parameters, or matrix of shape
parameters corresponding to the number of draw.
K
If you intend to do unsupervised learning,
set the number of populations you will use.
model
Choose supervised or unsupervised learning.
Value
A list contains q and f matrix.
radmixture documentation built on May 2, 2019, 6:11 a.m.
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Description Usage Arguments Value
Description
This function could help you initialize Q and F matrix conveniently especially when you intend to use supervised learning.
Usage
1 |
Arguments
g |
genotype matrix |
pop |
A data.frame. If you intend to do supervised learning, you must specify the ancestries of the reference individuals. |
alpha |
Parameter for dirichlet distribution. Vector of shape parameters, or matrix of shape parameters corresponding to the number of draw. |
K |
If you intend to do unsupervised learning, set the number of populations you will use. |
model |
Choose supervised or unsupervised learning. |
Value
A list contains q and f matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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