brainCancer: The brain cancer data set

Description Usage Format Author(s) Source References Examples


2 sets containing the gene expression profiles of 55 and 65 brain cancer patients respectively.




brainCancer is a list of 2 components: train and test. "train" is a numeric matrix with 55 samples (rows) across 5000 genes (columns). "test" is a numeric matrix with 65 samples (rows) across the same 5000 genes (columns).


Lin Song, Steve Horvath


Horvath S, Zhang B, Carlson M, Lu K, Zhu S, Felciano R, Laurance M, Zhao W, Shu Q, Lee Y, Scheck A, Liau L, Wu H, Geschwind D, Febbo P, Kornblum H, TF C, Nelson S, Mischel P: Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target. Proc Natl Acad Sci U S A 2006, 103(46):17402-7.


Lin Song, Peter Langfelder, Steve Horvath: Random generalized linear model: a highly accurate and interpretable ensemble predictor. BMC Bioinformatics (2013)



Example output

Loading required package: MASS
Loading required package: foreach
Loading required package: doParallel
Loading required package: iterators
Loading required package: parallel

randomGLM documentation built on May 2, 2019, 1:45 p.m.