mini: An example data set derived from the brain cancer data set

In randomGLM: Random General Linear Model Prediction

An example data set derived from the brain cancer data set

Description

This example contains one training set, one test set, a corresponding binary outcome and a corresponding continuous outcome. Outcomes are gene traits derived from the brain cancer data set.

Usage

data(mini)

Format

mini is a list of 6 components: x, xtest, yB, yBtest, yC and yCtest. "x" is a numeric matrix with 55 samples (rows) across 4999 genes (columns). "xtest" is a numeric matrix with 65 samples (rows) across the same 4999 genes (columns). They are subsets of the original brainCancer data. One gene is left out. "yC" and "yCtest" are continuous outcomes equal to the expression values of the left out gene in the training and test set respectively. "yB" and "yBtest" are binary outcomes dichotomized at the median based on "yC" and "yCtest".

Author(s)

Lin Song, Steve Horvath

Source

Horvath S, Zhang B, Carlson M, Lu K, Zhu S, Felciano R, Laurance M, Zhao W, Shu Q, Lee Y, Scheck A, Liau L, Wu H, Geschwind D, Febbo P, Kornblum H, TF C, Nelson S, Mischel P: Analysis of Oncogenic Signaling Networks in Glioblastoma Identifies ASPM as a Novel Molecular Target. Proc Natl Acad Sci U S A 2006, 103(46):17402-7.

References

Lin Song, Peter Langfelder, Steve Horvath: Random generalized linear model: a highly accurate and interpretable ensemble predictor. BMC Bioinformatics (2013)

Examples

data(mini)

randomGLM documentation built on April 11, 2022, 1:06 a.m.