Nothing
test_that("posterior_interval pi has the correct form", {
ds_pi_interval <- posterior_interval(ds_fit, pars = "pi")
expect_equal(dim(ds_pi_interval), c(4, 2))
expect_equal(colnames(ds_pi_interval), c("5%", "95%"))
ccds_pi_interval <- posterior_interval(ccds_fit, pars = "pi")
expect_equal(dim(ccds_pi_interval), c(4, 2))
expect_equal(colnames(ccds_pi_interval), c("5%", "95%"))
hds_pi_interval <- posterior_interval(hds_fit, pars = "pi")
expect_equal(dim(hds_pi_interval), c(4, 2))
expect_equal(colnames(hds_pi_interval), c("5%", "95%"))
})
test_that("Can change interval probability", {
default <- posterior_interval(ds_fit, pars = "pi")
smaller <- posterior_interval(ds_fit, pars = "pi", prob = 0.5)
expect_lte(default[1, 1], smaller[1, 1])
expect_gte(default[1, 2], smaller[1, 2])
larger <- posterior_interval(ds_fit, pars = "pi", prob = 0.99)
expect_gte(default[1, 1], larger[1, 1])
expect_lte(default[1, 2], larger[1, 2])
})
test_that("posterior_interval for theta has the correct form", {
J <- 5
K <- 4
ds_theta_interval <- posterior_interval(ds_fit, pars = "theta")
expect_equal(dim(ds_theta_interval), c(J * K * K , 2))
expect_equal(colnames(ds_theta_interval), c("5%", "95%"))
ccds_theta_interval <- posterior_interval(ccds_fit, pars = "theta")
expect_equal(dim(ccds_theta_interval), c(J * K * K , 2))
expect_equal(colnames(ccds_theta_interval), c("5%", "95%"))
hds_theta_interval <- posterior_interval(hds_fit, pars = "theta")
expect_equal(dim(hds_theta_interval), c(J * K * K , 2))
expect_equal(colnames(hds_theta_interval), c("5%", "95%"))
})
test_that("DS and CCDS posterior_interval for theta have the same rownames", {
ds_theta_interval <- posterior_interval(ds_fit, pars = "theta")
ccds_theta_interval <- posterior_interval(ds_fit, pars = "theta")
expect_equal(rownames(ds_theta_interval), rownames(ccds_theta_interval))
})
test_that("posterior_interval errors correctly", {
expect_error(
posterior_interval(ds_fit_optim, pars = "z"),
"Can't calculate posterior intervals for a model fit using optimisation."
)
expect_error(
posterior_interval(ds_fit, pars = "z"),
"Cannot calculate quantiles for z"
)
})
test_that("posterior_interval orders parameters correctly", {
correct_rownames <- sprintf("theta[1, 1, %s]", 1:K)
expect_equal(rownames(posterior_interval(ds_fit, pars = "theta"))[1:K],
correct_rownames)
})
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