Man pages for rdiversity
Measurement and Partitioning of Similarity-Sensitive Biodiversity

chainsawCut Phylogeny
check_partitionCheck partition matrix
check_similarityCheck similarity matrix
get_titleGet title
hs_parametersHistorical species parameters
inddivCalculate individual-level diversity
metacommunity-classmetacommunity-class
metacommunity-methodsCoerce to metacommunity
metadivCalculate metacommunity-level diversity
meta_gammaMetacommunity gamma diversity
norm_alphaNormalised alpha (low level diversity component)
norm_betaNormalised beta (low level diversity component)
norm_meta_alphaNormalised metacommunity alpha diversity
norm_meta_betaNormalised metacommunity beta diversity
norm_meta_rhoNormalised metacommunity rho diversity
norm_rhoNormalised rho (low level diversity component)
norm_sub_alphaNormalised subcommunity alpha diversity
norm_sub_betaNormalised subcommunity beta diversity
norm_sub_rhoNormalised subcommunity rho diversity
phy_abundanceCalculate abundance of historical species
phy_structCalculate phylogenetic structure matrix
plot_diversityPlot diversity
powermeanCalculate power mean
power_meanPower mean of vector elements
powermean-classpowermean-class
qDHill number / naive diversity with no similarity
qD_singleHill number / naive diversity of a single population
qDZSimilarity-sensitive diversity
qDZ_singleSimilarity-sensitive diversity of a single population
raw_alphaRaw alpha (low level diversity component)
raw_betaRaw beta (low level diversity component)
raw_gammaGamma (low level diversity component)
raw_meta_alphaRaw metacommunity alpha diversity
raw_meta_betaRaw metacommunity beta diversity
raw_meta_rhoRaw metacommunity rho diversity
raw_rhoRaw rho (low level diversity component)
raw_sub_alphaRaw subcommunity alpha diversity
raw_sub_betaRaw subcommunity beta diversity
raw_sub_rhoRaw subcommunity rho diversity
rdiversity-packagerdiversity
relativeentropyCalculate relative entropy
relativeentropy-classrelativeentropy-class
repartitionRepartition metacommunity
similarity_shimataniTaxonomic similarity matrix
smatrixPhylogenetic similarity matrix (ultrametric)
subdivCalculate subcommunity-level diversity
sub_gammaSubcommunity gamma diversity
summariseSummary function
tbarCalculate T_bar
zmatrixSimilarity matrix
rdiversity documentation built on July 4, 2017, 9:08 a.m.