similarity-class: similarity-class

In rdiversity: Measurement and Partitioning of Similarity-Sensitive Biodiversity

similarity-class

Description

Container for class similarity.

Usage

## S4 method for signature 'similarity'
show(object)

Arguments

object

object of class similarity

Fields

similarity

two-dimensional matrix of mode numeric with rows as types, columns as types, and elements containing the pairwise similarity of types

dat_id

object of class character describing the class of distance / similarity being used, e.g. "naive", "taxonomic", and so on

components

list containing the components necessary to calculate similarity. This list is empty when precompute_dist = TRUE when calculating distance. When a pairwise distance matrix is too large and precompute_dist = FALSE, this list contains all the information required to calculate pairwise distance between types

parameters

list containing parameters associated with converting pairwise distances to similarities (the dist2sim() arguments)

rdiversity documentation built on May 6, 2022, 9:06 a.m.