phenotype: Example phenotype data

In reGenotyper: Detecting Mislabeled Samples in Genetic Data

Description

phenotype: example data of phenotype for 500 genes (row) and 60 strains such as recombinant inbred lines (column).

data(phenotype)
phenotype[1:5,1:5]

\

	Sample1	Sample2	Sample3	Sample4	Sample5
Gene1	6.31	8.25	7.31	5.18	9.40
Gene2	7.12	5.67	5.14	7.78	6.49
Gene3	8.53	7.66	6.01	9.08	6.96
Gene4	6.59	9.29	7.38	7.13	7.88
Gene5	7.88	6.57	5.68	7.79	5.28

Usage

data(phenotype)

Format

phenotype: 500 genes by 100 samples (Strains).

Author(s)

Yang Li <[e-mail]>

Examples

  ##load the data
  data(phenotype)
  
  ##view part of the the data
  phenotype[1:5,1:5]

Example output

Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: MatrixEQTL
         Strain1   Strain2   Strain3   Strain4   Strain5
pheno1  4.080535  4.564889  4.197161  4.141886  4.095530
pheno3  2.102279  2.716047  2.294498  2.259633  2.160190
pheno5  5.203547  5.561302  5.180956  5.543519  5.001329
pheno7 10.737138 10.192628 10.150811 10.534321 10.011896
pheno9  5.087152  5.010886  5.178424  5.669223  5.253540

reGenotyper documentation built on May 1, 2019, 11:08 p.m.