read_fwf: Read a fixed width file into a tibble

In readr: Read Rectangular Text Data

Read a fixed width file into a tibble

Description

A fixed width file can be a very compact representation of numeric data. It's also very fast to parse, because every field is in the same place in every line. Unfortunately, it's painful to parse because you need to describe the length of every field. Readr aims to make it as easy as possible by providing a number of different ways to describe the field structure.

• fwf_empty() - Guesses based on the positions of empty columns.

• fwf_widths() - Supply the widths of the columns.

• fwf_positions() - Supply paired vectors of start and end positions.

• fwf_cols() - Supply named arguments of paired start and end positions or column widths.

Usage

read_fwf(
  file,
  col_positions = fwf_empty(file, skip, n = guess_max),
  col_types = NULL,
  col_select = NULL,
  id = NULL,
  locale = default_locale(),
  na = c("", "NA"),
  comment = "",
  trim_ws = TRUE,
  skip = 0,
  n_max = Inf,
  guess_max = min(n_max, 1000),
  progress = show_progress(),
  name_repair = "unique",
  num_threads = readr_threads(),
  show_col_types = should_show_types(),
  lazy = should_read_lazy(),
  skip_empty_rows = TRUE
)

fwf_empty(
  file,
  skip = 0,
  skip_empty_rows = FALSE,
  col_names = NULL,
  comment = "",
  n = 100L
)

fwf_widths(widths, col_names = NULL)

fwf_positions(start, end = NULL, col_names = NULL)

fwf_cols(...)

Arguments

file	Either a path to a file, a connection, or literal data (either a single string or a raw vector). Files ending in .gz, .bz2, .xz, or .zip will be automatically uncompressed. Files starting with ⁠http://⁠, ⁠https://⁠, ⁠ftp://⁠, or ⁠ftps://⁠ will be automatically downloaded. Remote gz files can also be automatically downloaded and decompressed. Literal data is most useful for examples and tests. To be recognised as literal data, the input must be either wrapped with I(), be a string containing at least one new line, or be a vector containing at least one string with a new line. Using a value of clipboard() will read from the system clipboard.
col_positions	Column positions, as created by fwf_empty(), fwf_widths() or fwf_positions(). To read in only selected fields, use fwf_positions(). If the width of the last column is variable (a ragged fwf file), supply the last end position as NA.
col_types	One of NULL, a cols() specification, or a string. See vignette("readr") for more details. If NULL, all column types will be inferred from guess_max rows of the input, interspersed throughout the file. This is convenient (and fast), but not robust. If the guessed types are wrong, you'll need to increase guess_max or supply the correct types yourself. Column specifications created by list() or cols() must contain one column specification for each column. If you only want to read a subset of the columns, use cols_only(). Alternatively, you can use a compact string representation where each character represents one column: c = character i = integer n = number d = double l = logical f = factor D = date T = date time t = time ? = guess _ or - = skip By default, reading a file without a column specification will print a message showing what readr guessed they were. To remove this message, set show_col_types = FALSE or set options(readr.show_col_types = FALSE).
col_select	Columns to include in the results. You can use the same mini-language as dplyr::select() to refer to the columns by name. Use c() to use more than one selection expression. Although this usage is less common, col_select also accepts a numeric column index. See ?tidyselect::language for full details on the selection language.
id	The name of a column in which to store the file path. This is useful when reading multiple input files and there is data in the file paths, such as the data collection date. If NULL (the default) no extra column is created.
locale	The locale controls defaults that vary from place to place. The default locale is US-centric (like R), but you can use locale() to create your own locale that controls things like the default time zone, encoding, decimal mark, big mark, and day/month names.
na	Character vector of strings to interpret as missing values. Set this option to character() to indicate no missing values.
comment	A string used to identify comments. Any text after the comment characters will be silently ignored.
trim_ws	Should leading and trailing whitespace (ASCII spaces and tabs) be trimmed from each field before parsing it?
skip	Number of lines to skip before reading data.
n_max	Maximum number of lines to read.
guess_max	Maximum number of lines to use for guessing column types. Will never use more than the number of lines read. See vignette("column-types", package = "readr") for more details.
progress	Display a progress bar? By default it will only display in an interactive session and not while knitting a document. The automatic progress bar can be disabled by setting option readr.show_progress to FALSE.
name_repair	Handling of column names. The default behaviour is to ensure column names are "unique". Various repair strategies are supported: "minimal": No name repair or checks, beyond basic existence of names. "unique" (default value): Make sure names are unique and not empty. "check_unique": No name repair, but check they are unique. "unique_quiet": Repair with the unique strategy, quietly. "universal": Make the names unique and syntactic. "universal_quiet": Repair with the universal strategy, quietly. A function: Apply custom name repair (e.g., name_repair = make.names for names in the style of base R). A purrr-style anonymous function, see rlang::as_function(). This argument is passed on as repair to vctrs::vec_as_names(). See there for more details on these terms and the strategies used to enforce them.
num_threads	The number of processing threads to use for initial parsing and lazy reading of data. If your data contains newlines within fields the parser should automatically detect this and fall back to using one thread only. However if you know your file has newlines within quoted fields it is safest to set num_threads = 1 explicitly.
show_col_types	If FALSE, do not show the guessed column types. If TRUE always show the column types, even if they are supplied. If NULL (the default) only show the column types if they are not explicitly supplied by the col_types argument.
lazy	Read values lazily? By default, this is FALSE, because there are special considerations when reading a file lazily that have tripped up some users. Specifically, things get tricky when reading and then writing back into the same file. But, in general, lazy reading (lazy = TRUE) has many benefits, especially for interactive use and when your downstream work only involves a subset of the rows or columns. Learn more in should_read_lazy() and in the documentation for the altrep argument of vroom::vroom().
skip_empty_rows	Should blank rows be ignored altogether? i.e. If this option is TRUE then blank rows will not be represented at all. If it is FALSE then they will be represented by NA values in all the columns.
col_names	Either NULL, or a character vector column names.
n	Number of lines the tokenizer will read to determine file structure. By default it is set to 100.
widths	Width of each field. Use NA as width of last field when reading a ragged fwf file.
start, end	Starting and ending (inclusive) positions of each field. Use NA as last end field when reading a ragged fwf file.
...	If the first element is a data frame, then it must have all numeric columns and either one or two rows. The column names are the variable names. The column values are the variable widths if a length one vector, and if length two, variable start and end positions. The elements of ... are used to construct a data frame with or or two rows as above.

Second edition changes

Comments are no longer looked for anywhere in the file. They are now only ignored at the start of a line.

See Also

read_table() to read fixed width files where each column is separated by whitespace.

Examples

fwf_sample <- readr_example("fwf-sample.txt")
writeLines(read_lines(fwf_sample))

# You can specify column positions in several ways:
# 1. Guess based on position of empty columns
read_fwf(fwf_sample, fwf_empty(fwf_sample, col_names = c("first", "last", "state", "ssn")))
# 2. A vector of field widths
read_fwf(fwf_sample, fwf_widths(c(20, 10, 12), c("name", "state", "ssn")))
# 3. Paired vectors of start and end positions
read_fwf(fwf_sample, fwf_positions(c(1, 30), c(20, 42), c("name", "ssn")))
# 4. Named arguments with start and end positions
read_fwf(fwf_sample, fwf_cols(name = c(1, 20), ssn = c(30, 42)))
# 5. Named arguments with column widths
read_fwf(fwf_sample, fwf_cols(name = 20, state = 10, ssn = 12))

readr documentation built on May 29, 2024, 2:37 a.m.