| +,geneList,geneList-method |
Man page
|
| +,geneModel,geneModel-method |
Man page
|
| .onUnload |
Source code
|
| [,geneList,ANY,ANY,ANY-method |
Man page
|
| addEnsembl |
Man page
|
| addEnsembl,ucscGenome-method |
Man page
|
| addEnsembl-methods |
Man page
|
| addIsCoding |
Man page
|
| addIsCoding,ensemblJunctions-method |
Man page
|
| addIsCoding-methods |
Man page
|
| addIsoforms |
Man page
|
| addIsoforms,ucscGenome-method |
Man page
|
| addIsoforms-methods |
Man page
|
| addXref |
Man page
|
| addXref,ucscGenome-method |
Man page
|
| addXref-methods |
Man page
|
| basedir |
Man page
|
| basedir,refGenome-method |
Man page
|
| basedir-methods |
Man page
|
| basedir<- |
Man page
|
| basedir<-,refGenome-method |
Man page
|
| basedir<--methods |
Man page
|
| ensPrimAssembly |
Man page
Source code
|
| ensemblExons |
Man page
Source code
|
| ensemblExons-class |
Man page
|
| ensemblGenome |
Man page
Source code
|
| ensemblGenome-class |
Man page
|
| ensemblJunctions |
Man page
Source code
|
| ensemblJunctions-class |
Man page
|
| extractByGeneId |
Man page
|
| extractByGeneId,refGenome,character-method |
Man page
|
| extractByGeneId,refJunctions,character-method |
Man page
|
| extractByGeneId-methods |
Man page
|
| extractByGeneName |
Man page
|
| extractByGeneName,refGenome,character-method |
Man page
|
| extractByGeneName,refJunctions,character-method |
Man page
|
| extractByGeneName-methods |
Man page
|
| extractFeature |
Man page
|
| extractFeature,refGenome,character-method |
Man page
|
| extractFeature-methods |
Man page
|
| extractPaGenes |
Man page
|
| extractPaGenes,ensemblGenome-method |
Man page
|
| extractPaGenes-methods |
Man page
|
| extractSeqids |
Man page
|
| extractSeqids,refGenome-method |
Man page
|
| extractSeqids-methods |
Man page
|
| extractTranscript |
Man page
|
| extractTranscript,refGenome,character-method |
Man page
|
| extractTranscript,ucscGenome-method |
Man page
|
| extractTranscript-methods |
Man page
|
| geneId<- |
Man page
|
| geneId<-,geneModel,character-method |
Man page
|
| geneId<-,geneModel,factor-method |
Man page
|
| geneId<--methods |
Man page
|
| geneList |
Man page
|
| geneList,ensemblGenome,character-method |
Man page
|
| geneList,ensemblGenome,factor-method |
Man page
|
| geneList,ucscGenome,character-method |
Man page
|
| geneList,ucscGenome,factor-method |
Man page
|
| geneList-class |
Man page
|
| geneList-methods |
Man page
|
| geneModel |
Man page
|
| geneModel,ensemblGenome,character-method |
Man page
|
| geneModel,ucscGenome,character-method |
Man page
|
| geneModel-class |
Man page
|
| geneModel-methods |
Man page
|
| geneName<- |
Man page
|
| geneName<-,geneModel,character-method |
Man page
|
| geneName<-,geneModel,factor-method |
Man page
|
| geneName<--methods |
Man page
|
| getCdsData |
Man page
|
| getCdsData,transcriptModel-method |
Man page
|
| getCdsData-methods |
Man page
|
| getExonData |
Man page
|
| getExonData,transcriptModel-method |
Man page
|
| getExonData-methods |
Man page
|
| getGeneId |
Man page
|
| getGeneId,ensemblGenome,character-method |
Man page
|
| getGeneId,ensemblGenome,factor-method |
Man page
|
| getGeneId-methods |
Man page
|
| getGenePositions |
Man page
|
| getGenePositions,ensemblGenome,character-method |
Man page
|
| getGenePositions,ensemblGenome,missing-method |
Man page
|
| getGenePositions,refJunctions,ANY-method |
Man page
|
| getGenePositions,ucscGenome,ANY-method |
Man page
|
| getGenePositions,ucscGenome-method |
Man page
|
| getGenePositions-methods |
Man page
|
| getGeneTable |
Man page
|
| getGeneTable,ensemblGenome-method |
Man page
|
| getGeneTable,ucscGenome-method |
Man page
|
| getGeneTable-methods |
Man page
|
| getGtf |
Man page
|
| getGtf,refGenome-method |
Man page
|
| getGtf-methods |
Man page
|
| getSpliceTable |
Man page
|
| getSpliceTable,refGenome-method |
Man page
|
| getSpliceTable-methods |
Man page
|
| getTranscript |
Man page
|
| getTranscript,geneModel,character-method |
Man page
|
| getTranscript,geneModel,numeric-method |
Man page
|
| getTranscript-methods |
Man page
|
| getTranscriptFromGtf |
Source code
|
| getXref |
Man page
|
| getXref,ucscGenome-method |
Man page
|
| getXref-methods |
Man page
|
| initialize,geneList-method |
Man page
|
| initialize,geneModel-method |
Man page
|
| initialize,refGenome-method |
Man page
|
| initialize,transcriptModel-method |
Man page
|
| length,geneList-method |
Man page
|
| loadGenome |
Man page
Source code
|
| loadGenomeDb |
Man page
Source code
|
| names,geneList-method |
Man page
|
| names<-,geneList,character-method |
Man page
|
| names<-,geneList,numeric-method |
Man page
|
| overlap |
Man page
Source code
|
| overlapJuncs |
Man page
Source code
|
| overlap_seqs |
Source code
|
| plot.geneModel |
Man page
Source code
|
| plot.transcriptModel |
Man page
Source code
|
| plotUbs |
Man page
|
| plotUbs,unifiedExons-method |
Man page
|
| plotUbs-methods |
Man page
|
| read.gtf |
Man page
|
| read.gtf,refGenome-method |
Man page
|
| read.gtf-methods |
Man page
|
| refExons |
Man page
|
| refExons,refGenome-method |
Man page
|
| refExons-class |
Man page
|
| refExons-methods |
Man page
|
| refGenome-class |
Man page
|
| refGenome-package |
Man page
|
| refJunctions |
Man page
|
| refJunctions-class |
Man page
|
| saveGenome |
Man page
|
| saveGenome,refGenome-method |
Man page
|
| saveGenome-methods |
Man page
|
| setGtf |
Man page
|
| setGtf,refGenome-method |
Man page
|
| setGtf-methods |
Man page
|
| show,geneList-method |
Man page
|
| tableFeatures |
Man page
|
| tableFeatures,ensemblGenome-method |
Man page
|
| tableFeatures,ucscGenome-method |
Man page
|
| tableFeatures-methods |
Man page
|
| tableSeqids |
Man page
|
| tableSeqids,refGenome-method |
Man page
|
| tableSeqids-methods |
Man page
|
| tableTranscript.id |
Man page
|
| tableTranscript.id,ensemblGenome-method |
Man page
|
| tableTranscript.id,ucscGenome-method |
Man page
|
| tableTranscript.id-methods |
Man page
|
| tableTranscript.name |
Man page
|
| tableTranscript.name,ensemblGenome-method |
Man page
|
| tableTranscript.name-methods |
Man page
|
| transcriptModel-class |
Man page
|
| ucPrimAssembly |
Man page
Source code
|
| ucscExons |
Man page
Source code
|
| ucscExons-class |
Man page
|
| ucscGenome |
Man page
Source code
|
| ucscGenome-class |
Man page
|
| ucscJunctions |
Man page
Source code
|
| ucscJunctions-class |
Man page
|
| uid |
Source code
|
| unifiedExons-class |
Man page
|
| unifyJuncs |
Man page
|
| unifyJuncs,refJunctions-method |
Man page
|
| unifyJuncs-methods |
Man page
|
| unifyRanges |
Man page
|
| unifyRanges,refExons-method |
Man page
|
| unifyRanges-methods |
Man page
|
| writeDB |
Man page
|
| writeDB,refGenome-method |
Man page
|
| writeDB-methods |
Man page
|
