Global functions | |
---|---|
+,geneList,geneList-method | Man page |
+,geneModel,geneModel-method | Man page |
.onUnload | Source code |
[,geneList,ANY,ANY,ANY-method | Man page |
addEnsembl | Man page |
addEnsembl,ucscGenome-method | Man page |
addEnsembl-methods | Man page |
addIsCoding | Man page |
addIsCoding,ensemblJunctions-method | Man page |
addIsCoding-methods | Man page |
addIsoforms | Man page |
addIsoforms,ucscGenome-method | Man page |
addIsoforms-methods | Man page |
addXref | Man page |
addXref,ucscGenome-method | Man page |
addXref-methods | Man page |
basedir | Man page |
basedir,refGenome-method | Man page |
basedir-methods | Man page |
basedir<- | Man page |
basedir<-,refGenome-method | Man page |
basedir<--methods | Man page |
ensPrimAssembly | Man page Source code |
ensemblExons | Man page Source code |
ensemblExons-class | Man page |
ensemblGenome | Man page Source code |
ensemblGenome-class | Man page |
ensemblJunctions | Man page Source code |
ensemblJunctions-class | Man page |
extractByGeneId | Man page |
extractByGeneId,refGenome,character-method | Man page |
extractByGeneId,refJunctions,character-method | Man page |
extractByGeneId-methods | Man page |
extractByGeneName | Man page |
extractByGeneName,refGenome,character-method | Man page |
extractByGeneName,refJunctions,character-method | Man page |
extractByGeneName-methods | Man page |
extractFeature | Man page |
extractFeature,refGenome,character-method | Man page |
extractFeature-methods | Man page |
extractPaGenes | Man page |
extractPaGenes,ensemblGenome-method | Man page |
extractPaGenes-methods | Man page |
extractSeqids | Man page |
extractSeqids,refGenome-method | Man page |
extractSeqids-methods | Man page |
extractTranscript | Man page |
extractTranscript,refGenome,character-method | Man page |
extractTranscript,ucscGenome-method | Man page |
extractTranscript-methods | Man page |
geneId<- | Man page |
geneId<-,geneModel,character-method | Man page |
geneId<-,geneModel,factor-method | Man page |
geneId<--methods | Man page |
geneList | Man page |
geneList,ensemblGenome,character-method | Man page |
geneList,ensemblGenome,factor-method | Man page |
geneList,ucscGenome,character-method | Man page |
geneList,ucscGenome,factor-method | Man page |
geneList-class | Man page |
geneList-methods | Man page |
geneModel | Man page |
geneModel,ensemblGenome,character-method | Man page |
geneModel,ucscGenome,character-method | Man page |
geneModel-class | Man page |
geneModel-methods | Man page |
geneName<- | Man page |
geneName<-,geneModel,character-method | Man page |
geneName<-,geneModel,factor-method | Man page |
geneName<--methods | Man page |
getCdsData | Man page |
getCdsData,transcriptModel-method | Man page |
getCdsData-methods | Man page |
getExonData | Man page |
getExonData,transcriptModel-method | Man page |
getExonData-methods | Man page |
getGeneId | Man page |
getGeneId,ensemblGenome,character-method | Man page |
getGeneId,ensemblGenome,factor-method | Man page |
getGeneId-methods | Man page |
getGenePositions | Man page |
getGenePositions,ensemblGenome,character-method | Man page |
getGenePositions,ensemblGenome,missing-method | Man page |
getGenePositions,refJunctions,ANY-method | Man page |
getGenePositions,ucscGenome,ANY-method | Man page |
getGenePositions,ucscGenome-method | Man page |
getGenePositions-methods | Man page |
getGeneTable | Man page |
getGeneTable,ensemblGenome-method | Man page |
getGeneTable,ucscGenome-method | Man page |
getGeneTable-methods | Man page |
getGtf | Man page |
getGtf,refGenome-method | Man page |
getGtf-methods | Man page |
getSpliceTable | Man page |
getSpliceTable,refGenome-method | Man page |
getSpliceTable-methods | Man page |
getTranscript | Man page |
getTranscript,geneModel,character-method | Man page |
getTranscript,geneModel,numeric-method | Man page |
getTranscript-methods | Man page |
getTranscriptFromGtf | Source code |
getXref | Man page |
getXref,ucscGenome-method | Man page |
getXref-methods | Man page |
initialize,geneList-method | Man page |
initialize,geneModel-method | Man page |
initialize,refGenome-method | Man page |
initialize,transcriptModel-method | Man page |
length,geneList-method | Man page |
loadGenome | Man page Source code |
loadGenomeDb | Man page Source code |
names,geneList-method | Man page |
names<-,geneList,character-method | Man page |
names<-,geneList,numeric-method | Man page |
overlap | Man page Source code |
overlapJuncs | Man page Source code |
overlap_seqs | Source code |
plot.geneModel | Man page Source code |
plot.transcriptModel | Man page Source code |
plotUbs | Man page |
plotUbs,unifiedExons-method | Man page |
plotUbs-methods | Man page |
read.gtf | Man page |
read.gtf,refGenome-method | Man page |
read.gtf-methods | Man page |
refExons | Man page |
refExons,refGenome-method | Man page |
refExons-class | Man page |
refExons-methods | Man page |
refGenome-class | Man page |
refGenome-package | Man page |
refJunctions | Man page |
refJunctions-class | Man page |
saveGenome | Man page |
saveGenome,refGenome-method | Man page |
saveGenome-methods | Man page |
setGtf | Man page |
setGtf,refGenome-method | Man page |
setGtf-methods | Man page |
show,geneList-method | Man page |
tableFeatures | Man page |
tableFeatures,ensemblGenome-method | Man page |
tableFeatures,ucscGenome-method | Man page |
tableFeatures-methods | Man page |
tableSeqids | Man page |
tableSeqids,refGenome-method | Man page |
tableSeqids-methods | Man page |
tableTranscript.id | Man page |
tableTranscript.id,ensemblGenome-method | Man page |
tableTranscript.id,ucscGenome-method | Man page |
tableTranscript.id-methods | Man page |
tableTranscript.name | Man page |
tableTranscript.name,ensemblGenome-method | Man page |
tableTranscript.name-methods | Man page |
transcriptModel-class | Man page |
ucPrimAssembly | Man page Source code |
ucscExons | Man page Source code |
ucscExons-class | Man page |
ucscGenome | Man page Source code |
ucscGenome-class | Man page |
ucscJunctions | Man page Source code |
ucscJunctions-class | Man page |
uid | Source code |
unifiedExons-class | Man page |
unifyJuncs | Man page |
unifyJuncs,refJunctions-method | Man page |
unifyJuncs-methods | Man page |
unifyRanges | Man page |
unifyRanges,refExons-method | Man page |
unifyRanges-methods | Man page |
writeDB | Man page |
writeDB,refGenome-method | Man page |
writeDB-methods | Man page |
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