referenceIntervals: Reference Intervals

This is a collection of tools to allow the medical professional to calculate appropriate reference ranges (intervals) with confidence intervals around the limits for diagnostic purposes.

Author
Daniel Finnegan
Date of publication
2014-09-13 07:55:49
Maintainer
Daniel Finnegan <dan.finnegan@gmail.com>
License
GPL-3
Version
1.1.1

View on CRAN

Man pages

cook.outliers
Determines outliers using Cook's Distance
dixon.outliers
Determines outliers using Dixon's Q Test method
horn.outliers
Determines outliers using Horn's method and Tukey's...
nonparRanks
Table that dictate the ranks for the confidence intervals...
nonparRI
Determines the reference interval using non-parametric means
plot.interval
Overload of plot function to include the ability to plot the...
print.interval
Overload of print in order to concisely print the results of...
print.interval.sub
Overload of print in order to concisely print the results of...
referenceIntervals-package
This package calculates reference intervals from a dataset...
refLimit
Calculates and returns reference and confidence intervals for...
robust
Algorithm that implements the robust method for reference...
set120
Dataset containing 120 values
set20
Small dataset containing 20 samples
set200
Dataset containing 200 values
set50
Dataset containing 50 values
sets.RData
Collection of sets
singleRefLimit
This is the workhorse of the refLimit function
tables.RData
Two reference tables necessary for reference interval...
vanderLoo.outliers
Mark van der Loo's outlier detection method in the...

Files in this package

referenceIntervals
referenceIntervals/NAMESPACE
referenceIntervals/data
referenceIntervals/data/sysdata.rda
referenceIntervals/R
referenceIntervals/R/referenceIntervals.R
referenceIntervals/MD5
referenceIntervals/DESCRIPTION
referenceIntervals/man
referenceIntervals/man/sets.RData.Rd
referenceIntervals/man/set120.Rd
referenceIntervals/man/tables.RData.Rd
referenceIntervals/man/print.interval.sub.Rd
referenceIntervals/man/cook.outliers.Rd
referenceIntervals/man/singleRefLimit.Rd
referenceIntervals/man/robust.Rd
referenceIntervals/man/plot.interval.Rd
referenceIntervals/man/nonparRI.Rd
referenceIntervals/man/refLimit.Rd
referenceIntervals/man/set50.Rd
referenceIntervals/man/referenceIntervals-package.Rd
referenceIntervals/man/vanderLoo.outliers.Rd
referenceIntervals/man/dixon.outliers.Rd
referenceIntervals/man/set200.Rd
referenceIntervals/man/nonparRanks.Rd
referenceIntervals/man/print.interval.Rd
referenceIntervals/man/set20.Rd
referenceIntervals/man/horn.outliers.Rd