relMix: Relationship Inference for DNA Mixtures

Makes relationship inference involving DNA mixtures with unknown profiles.

Author
Navreet Kaur, Thore Egeland, Guro Dorum
Date of publication
2016-09-18 17:41:43
Maintainer
Guro Dorum <guro.dorum@gmail.com>
License
GPL (>= 2)
Version
1.2

View on CRAN

Man pages

allGenos
Find all possible genotypes
allGenosRel
Finds all possible genotypes for specified individuals in a...
createDatamatrix
Create data matrix with possible genotype combinations for...
db
Allele database
db2
Allele database for 22 markers
generateMix
Create a mixture of genotypes with simulated drop-in and...
mixLikDrop
Likelihoods for DNA mixtures with dropout and dropin
relMix
Relationship inference based on mixtures.
relMixGUI
GUI for relMix

Files in this package

relMix
relMix/inst
relMix/inst/extdata
relMix/inst/extdata/mixture_silent_ex.txt
relMix/inst/extdata/custom_pedigree_unrelated_duo.R
relMix/inst/extdata/freqsSilent.txt
relMix/inst/extdata/references.txt
relMix/inst/extdata/frequencies22Markers.txt
relMix/inst/extdata/mixture.txt
relMix/inst/extdata/custom_pedigree_maternity_duo.R
relMix/inst/extdata/references_silent.txt
relMix/inst/doc
relMix/inst/doc/relMixVignette.html
relMix/inst/doc/relMixVignette.R
relMix/inst/doc/relMixVignette.Rmd
relMix/NAMESPACE
relMix/data
relMix/data/db2.RData
relMix/data/db.RData
relMix/R
relMix/R/relMixGUI.R
relMix/R/relMix.R
relMix/R/mixLikDrop.R
relMix/R/allGenosRel.R
relMix/R/globals.R
relMix/R/createDatamatrix.R
relMix/R/generateMix.R
relMix/R/allGenos.R
relMix/vignettes
relMix/vignettes/mixture_silent_ex.txt
relMix/vignettes/database_options_ex2.PNG
relMix/vignettes/import_data.png
relMix/vignettes/contributors_ex1.PNG
relMix/vignettes/database_crop.png
relMix/vignettes/dropout_ex2.PNG
relMix/vignettes/custom_ped_screenshot.png
relMix/vignettes/pedigrees_ex1.PNG
relMix/vignettes/mutations.png
relMix/vignettes/database.PNG
relMix/vignettes/results_ex2.PNG
relMix/vignettes/freqsSilent.txt
relMix/vignettes/references.txt
relMix/vignettes/contributors_ex2.PNG
relMix/vignettes/relMixVignette.Rmd
relMix/vignettes/scaling_ex2.PNG
relMix/vignettes/frequencies22Markers.txt
relMix/vignettes/dropout_ex1.PNG
relMix/vignettes/relMix_screenshot.PNG
relMix/vignettes/results_ex1.PNG
relMix/vignettes/contributors.PNG
relMix/vignettes/mixture.txt
relMix/vignettes/custom_ped_ex2.png
relMix/vignettes/mutations_ex2.PNG
relMix/vignettes/database_options.PNG
relMix/vignettes/references_silent.txt
relMix/MD5
relMix/build
relMix/build/vignette.rds
relMix/DESCRIPTION
relMix/man
relMix/man/relMixGUI.Rd
relMix/man/db2.Rd
relMix/man/db.Rd
relMix/man/allGenos.Rd
relMix/man/allGenosRel.Rd
relMix/man/relMix.Rd
relMix/man/createDatamatrix.Rd
relMix/man/generateMix.Rd
relMix/man/mixLikDrop.Rd