createDatamatrix: Create data matrix with possible genotype combinations for...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/createDatamatrix.R

Description

A data matrix of genotypes for known individuals and all possible genotypes for unknown individuals is created.

Usage

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createDatamatrix(locus, knownGenos, idsU = NULL)

Arguments

locus

A Familias locus containing information about the alleles

knownGenos

List of known genotypes. Each element is a vector with genotype for one individual. The elements must be named

idsU

Vector of indices for unknown individuals

Value

A data matrix of genotypes where each row corresponds to an individual.

Author(s)

Guro Dorum

See Also

FamiliasLocus and relMix.

Examples

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#Define alleles and frequencies
alleles <- 1:2
afreq <- c(0.5,0.5)
#Create locus object
locus <- Familias::FamiliasLocus(frequencies=afreq,name="M1",allelenames= alleles)
#Known genotypes of alleged father and mother, child's genotype is uknown
gAF <- c(1,1)
gMO <- c(1,1)
datamatrix <- createDatamatrix(locus,knownGenos=list(AF=gAF,MO=gMO),idsU=c("CH"))

relMix documentation built on Dec. 15, 2020, 5:11 p.m.