repfdr: Replicability Analysis for Multiple Studies of High Dimension
Version 1.1-3

Estimation of Bayes and local Bayes false discovery rates for replicability analysis.

Browse man pages Browse package API and functions Browse package files

AuthorRuth Heller [cre, aut], Shachar Kaufman [aut], Shay Yaacoby [aut], Daniel Yekutieli [aut]
Date of publication2015-04-06 07:51:22
MaintainerRuth Heller <ruheller@gmail.com>
LicenseGPL (>= 2)
Version1.1-3
URL http://github.com/shay-y/repfdr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("repfdr")

Man pages

binned_zmat: Three GWAS studies - input objects to main function
binned_zmat_sim: Simulated data set - input objects to main function
em.control: Control Parameters for the EM algorithm
hconfigs: Enumeration of all possible vectors of association status.
hmat_sim: Simulated data set - indicators of association status matrix
ldr: Estimation of posterior probabilities for the vectors of...
piem: Estimation of the prior probabilities for each association...
repfdr: Bayes and local Bayes false discovery rate estimation for...
SNPlocations: Three GWAS studies SNPs locations and data
zmat_sim: Simulated data set
ztobins: Binning of z-scores and estimation of the probabilities in...

Functions

Pi Man page
SNPlocations Man page
binned_zmat Man page
binned_zmat_sim Man page
bz Man page
bz_sim Man page
em.control Man page Source code
hconfigs Man page Source code
hmat_sim Man page
inputchk Source code
is.int Source code
ldr Man page Source code
manhattan Man page Source code
pbz Man page
pbz_sim Man page
piem Man page Source code
repfdr Man page Source code
zmat_sim Man page
ztobins Man page Source code

Files

src
src/Makevars
src/Makevars.win
src/REM.c
NAMESPACE
data
data/SNPlocations.RData
data/binned_zmat.RData
data/hmat_sim.RData
data/binned_zmat_sim.RData
data/datalist
data/zmat_sim.RData
data/Pi.RData
R
R/repfdr.R
R/manhattan.R
R/ztobins.R
README.md
MD5
DESCRIPTION
man
man/ldr.Rd
man/binned_zmat.Rd
man/binned_zmat_sim.Rd
man/em.control.Rd
man/hconfigs.Rd
man/ztobins.Rd
man/hmat_sim.Rd
man/piem.Rd
man/repfdr.Rd
man/SNPlocations.Rd
man/zmat_sim.Rd
repfdr documentation built on May 19, 2017, 9:06 p.m.