repfdr: Replicability Analysis for Multiple Studies of High Dimension

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Estimation of Bayes and local Bayes false discovery rates for replicability analysis.

Author
Ruth Heller [cre, aut], Shachar Kaufman [aut], Shay Yaacoby [aut], Daniel Yekutieli [aut]
Date of publication
2015-04-06 07:51:22
Maintainer
Ruth Heller <ruheller@gmail.com>
License
GPL (>= 2)
Version
1.1-3
URLs

View on CRAN

Man pages

binned_zmat
Three GWAS studies - input objects to main function
binned_zmat_sim
Simulated data set - input objects to main function
em.control
Control Parameters for the EM algorithm
hconfigs
Enumeration of all possible vectors of association status.
hmat_sim
Simulated data set - indicators of association status matrix
ldr
Estimation of posterior probabilities for the vectors of...
piem
Estimation of the prior probabilities for each association...
repfdr
Bayes and local Bayes false discovery rate estimation for...
SNPlocations
Three GWAS studies SNPs locations and data
zmat_sim
Simulated data set
ztobins
Binning of z-scores and estimation of the probabilities in...

Files in this package

repfdr
repfdr/src
repfdr/src/Makevars
repfdr/src/Makevars.win
repfdr/src/REM.c
repfdr/NAMESPACE
repfdr/data
repfdr/data/SNPlocations.RData
repfdr/data/binned_zmat.RData
repfdr/data/hmat_sim.RData
repfdr/data/binned_zmat_sim.RData
repfdr/data/datalist
repfdr/data/zmat_sim.RData
repfdr/data/Pi.RData
repfdr/R
repfdr/R/repfdr.R
repfdr/R/manhattan.R
repfdr/R/ztobins.R
repfdr/README.md
repfdr/MD5
repfdr/DESCRIPTION
repfdr/man
repfdr/man/ldr.Rd
repfdr/man/binned_zmat.Rd
repfdr/man/binned_zmat_sim.Rd
repfdr/man/em.control.Rd
repfdr/man/hconfigs.Rd
repfdr/man/ztobins.Rd
repfdr/man/hmat_sim.Rd
repfdr/man/piem.Rd
repfdr/man/repfdr.Rd
repfdr/man/SNPlocations.Rd
repfdr/man/zmat_sim.Rd