reportRx: Tools for automatically generating reproducible clinical report

reportRx is a set of tools that integrates with LaTeX and knitr to automatically generate generate reproducible clinical reports. Fuctions to automatically produce demoraphic tables, outcome summaries, univariate and multivariate analysis results and more are included.

Author
Ryan Del Bel <rdelbel@gmail.com>, Wei Xu <wxu@uhnres.utoronto.ca>
Date of publication
2013-12-17 23:18:16
Maintainer
Ryan Del Bel <rdelbel@gmail.com>
License
GPL-3
Version
1.0

View on CRAN

Man pages

addspace
Add spaces to strings in LaTeX
boxcoxfitRx
fit box cox transformed linear model
cap
Capitalize a string
citime
Get CI cinfidence interval
covsum
Get covariate summary dataframe
crrRx
fit crr model
etsum
Get event time summary dataframe
forestplot
Create a forrest plot
lbld
Bold strings in LaTeX
lpvalue
Formats p-values for LaTeX
makedocx
Convert .TeX to .docx
mvsum
Get multivariate summary dataframe
nicename
Clean strings for printing
pcovsum
Print covariate summary Latex
petsum
Print LaTeX event time summary
plotci
Plot CI curve
plotkm
Plot KM curve
pmvsum
Print multivariate summary LaTeX table
psthr
Round and paste with parentheses
pstprn
Paste with parentheses
puvsum
Print univariate summary LaTeX table
pvalue
Formats p-values
sanitizestr
Sanitizes strings to not break LaTeX
uvsum
Get univariate summary dataframe

Files in this package

reportRx
reportRx/NAMESPACE
reportRx/R
reportRx/R/helper.R
reportRx/R/misc.R
reportRx/R/main.R
reportRx/MD5
reportRx/DESCRIPTION
reportRx/man
reportRx/man/petsum.Rd
reportRx/man/makedocx.Rd
reportRx/man/addspace.Rd
reportRx/man/plotkm.Rd
reportRx/man/sanitizestr.Rd
reportRx/man/pcovsum.Rd
reportRx/man/psthr.Rd
reportRx/man/lpvalue.Rd
reportRx/man/lbld.Rd
reportRx/man/puvsum.Rd
reportRx/man/boxcoxfitRx.Rd
reportRx/man/etsum.Rd
reportRx/man/plotci.Rd
reportRx/man/pmvsum.Rd
reportRx/man/cap.Rd
reportRx/man/forestplot.Rd
reportRx/man/crrRx.Rd
reportRx/man/uvsum.Rd
reportRx/man/pstprn.Rd
reportRx/man/nicename.Rd
reportRx/man/covsum.Rd
reportRx/man/mvsum.Rd
reportRx/man/pvalue.Rd
reportRx/man/citime.Rd