reutils: Talk to the NCBI EUtils

An interface to NCBI databases such as PubMed, GenBank, or GEO powered by the Entrez Programming Utilities (EUtils). The nine EUtils provide programmatic access to the NCBI Entrez query and database system for searching and retrieving biological data.

AuthorGerhard Schöfl <gerhard.schofl@gmail.com>
Date of publication2016-09-03 16:39:17
MaintainerGerhard Schöfl <gerhard.schofl@gmail.com>
LicenseMIT + file LICENSE
Version0.2.3
https://github.com/gschofl/reutils

View on CRAN

Functions

content Man page
content,ecitmatch-method Man page
content,efetch-method Man page
content,egquery-method Man page
content,einfo-method Man page
content,elink-method Man page
content,epost-method Man page
content,esearch-method Man page
content,espell-method Man page
content,esummary-method Man page
content,eutil-method Man page
database Man page
database,entrez_linkset-method Man page
database,entrez_uid-method Man page
database,eutil-method Man page
ecitmatch Man page
ecitmatch-class Man page
efetch Man page
[[,efetch,character-method Man page
[,efetch,character,missing-method Man page
efetch-class Man page
egquery Man page
egquery-class Man page
einfo Man page
[[,einfo,ANY-method Man page
[,einfo,ANY,missing-method Man page
einfo-class Man page
elink Man page
[,elink,ANY,missing-method Man page
[,elink,character,ANY-method Man page
elink-class Man page
entrez_linkset-class Man page
entrez_uid-class Man page
epost Man page
epost-class Man page
esearch Man page
esearch-class Man page
[,esearch,numeric,missing-method Man page
espell Man page
espell-class Man page
esummary Man page
[,esummary,character,ANY-method Man page
[[,esummary,character-method Man page
esummary-class Man page
eutil Man page
eutil-class Man page
eutil_error Man page
eutil_error-class Man page
getError Man page
getError,eutil-method Man page
getUrl Man page
getUrl,eutil-method Man page
linkset Man page
linkset,elink-method Man page
linkset,entrez_linkset-method Man page
make_flattener Man page
ncbi_retrieval_type Man page
performQuery Man page
performQuery,eutil-method Man page
querykey Man page
querykey,entrez_uid-method Man page
querykey,epost-method Man page
querykey,esearch-method Man page
retmode Man page
retmode,eutil-method Man page
rettype Man page
rettype,eutil-method Man page
reutils Man page
reutils-package Man page
uid Man page
uid,elink-method Man page
uid,entrez_linkset-method Man page
uid,entrez_uid-method Man page
uid,esearch-method Man page
webenv Man page
webenv,entrez_uid-method Man page
webenv,epost-method Man page
webenv,esearch-method Man page
xattr Man page
xname Man page
xset Man page
xvalue Man page

Files

reutils
reutils/inst
reutils/inst/examples
reutils/inst/examples/reutils.R
reutils/tests
reutils/tests/testthat
reutils/tests/testthat/test-02-eutil-methods.R
reutils/tests/testthat/test-03-einfo.R
reutils/tests/testthat/test-08-elink.R
reutils/tests/testthat/test-09-ecitmatch.R
reutils/tests/testthat/data
reutils/tests/testthat/data/test.xml
reutils/tests/testthat/test-07-efetch.R
reutils/tests/testthat/test-06-epost.R
reutils/tests/testthat/test-01-helpers.R
reutils/tests/testthat/test-04-esearch.R
reutils/tests/testthat/test-05-esummary.R
reutils/tests/test-all.R
reutils/NAMESPACE
reutils/NEWS
reutils/R
reutils/R/egquery.R reutils/R/utils.R reutils/R/einfo.R reutils/R/ecitmatch.R reutils/R/eutil.R reutils/R/parse-docsum.R reutils/R/eutil-error.R reutils/R/reutils-package.R reutils/R/elink.R reutils/R/parse-params.R reutils/R/epost.R reutils/R/espell.R reutils/R/esearch.R reutils/R/esummary.R reutils/R/zzz.R reutils/R/efetch.R
reutils/MD5
reutils/DESCRIPTION
reutils/man
reutils/man/querykey.Rd reutils/man/sub-esummary.Rd reutils/man/entrez_uid-class.Rd reutils/man/content.Rd reutils/man/epost.Rd reutils/man/getUrl.Rd reutils/man/uid.Rd reutils/man/retmode.Rd reutils/man/webenv.Rd reutils/man/reutils-package.Rd reutils/man/eutil_error-class.Rd reutils/man/extract-einfo.Rd reutils/man/entrez_linkset-class.Rd reutils/man/performQuery.Rd reutils/man/xname.Rd reutils/man/esearch.Rd reutils/man/einfo.Rd reutils/man/extract-efetch.Rd reutils/man/getError.Rd reutils/man/espell.Rd reutils/man/eutil-class.Rd reutils/man/xset.Rd reutils/man/efetch.Rd reutils/man/ecitmatch.Rd reutils/man/xvalue.Rd reutils/man/esummary.Rd reutils/man/database.Rd reutils/man/extract-elink.Rd reutils/man/elink.Rd reutils/man/extract-esearch.Rd reutils/man/xattr.Rd reutils/man/ncbi_retrieval_type.Rd reutils/man/linkset.Rd reutils/man/make_flattener.Rd reutils/man/egquery.Rd reutils/man/rettype.Rd
reutils/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.