rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Package details

AuthorGerry Tonkin-Hill [cre, aut]
MaintainerGerry Tonkin-Hill <g.tonkinhill@gmail.com>
LicenseMIT + file LICENSE
URL https://github.com/gtonkinhill/rhierbaps
Package repositoryView on CRAN
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rhierbaps documentation built on Jan. 11, 2020, 9:33 a.m.