rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Package details

AuthorGerry Tonkin-Hill [cre, aut]
MaintainerGerry Tonkin-Hill <[email protected]>
LicenseMIT + file LICENSE
Version1.1.0
URL https://github.com/gtonkinhill/rhierbaps
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("rhierbaps")

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rhierbaps documentation built on Oct. 10, 2018, 5:05 p.m.