riverdist: River Network Distance Computation and Applications

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Reads river network shape files and computes network distances. Also included are a variety of computation and graphical tools designed for fisheries telemetry research, such as minimum home range, kernel density estimation, and clustering analysis using empirical k-functions with a bootstrap envelope. Tools are also provided for editing the river networks, meaning there is no reliance on external software.

Author
Matt Tyers [aut, cre]
Date of publication
2016-08-12 23:56:20
Maintainer
Matt Tyers <matt.tyers@alaska.gov>
License
GPL-2
Version
0.12.2
URLs

View on CRAN

Man pages

abstreams
Dataset: A-B Streams
abstreams0
Dataset: A-B Streams 0
addcumuldist
Add Cumulative Distance to a River Network
addverts
Add Vertices To Maintain a Minumum Distance Between Vertices
buildlookup
Build Lookup Tables for Fast Distance Computation
buildsegroutes
Build Segment Routes
calculateconnections
Calculate the Connectivity Matrix for a River Network
checkbraided
Check for Braiding in a River Network
checkbraidedTF
Check for Braiding in a River Network
cleanup
Interactive Cleanup of a River Network
connectsegs
Connect Segments
detectroute
Detect Route
dissolve
Dissolve
fakefish
Dataset: Fakefish
fakefish_density
Dataset: Fakefish Density
Gulk
Dataset: Gulkana River
highlightseg
Highlight Segments
homerange
Home Range
isflowconnected
Check Flow-Connectedness
Kenai1
Dataset: Kenai River 1
Kenai2
Dataset: Kenai River 2
Kenai3
Dataset: Kenai River 3
kfunc
Plotting K-functions for a Set of Surveys
KilleyW
Dataset: Killey River, West Channel
Koyukuk0
Dataset: Koyukuk River 0
Koyukuk1
Dataset: Koyukuk River 1
Koyukuk2
Dataset: Koyukuk River 2
line2network
Create a River Network Object from a Shapefile
line98
Dataset: Line 98 of Kenai River 1 (Long-Lat)
makeriverdensity
Calculate Kernel Density Using River Distance
mapbyname
Map Segments by Name
matbysurveylist
Generate List of Distance Matrix Between Observations, for...
mouthdist
Distance From Mouth
mouthdistbysurvey
Distance From Mouth for All Observations of Individuals
pdist
Pythagorean Distance
pdisttot
Total Pythagorean Distance
plotmatbysurveylist
Plot Upstream Distance Between Observations of All...
plot.riverdensity
Plot Kernel Density Using River Distance
plotriverdensitypoints
Plot Points Used for Kernel Density
plot.rivernetwork
Plotting a River Network
plotseq
Plot Sequence of Observations
pointshp2segvert
Convert a Point Shapefile to River Locations
removeduplicates
Remove Duplicates
removemicrosegs
Remove Segments that are Smaller than the Connectivity...
removeunconnected
Remove Unconnected Segments
riverdensity
The "riverdensity" Class
riverdirection
River Direction
riverdirectionmat
River Direction Matrix
riverdirectionmatbysurvey
River Direction Matrix of All Observations of an Individual
riverdirectionseq
River Travel Direction Between Sequential Observations
riverdirectiontofrom
River Direction Matrix between Two Datasets
riverdistance
River Distance
riverdistancelist
Multiple River Distances
riverdistancemat
River Distance Matrix
riverdistancematbysurvey
River Distance Matrix of All Observations of an Individual
riverdistanceseq
River Distance Between Sequential Observations
riverdistancetofrom
River Distance Matrix between Two Datasets
riverdist-package
River Network Distance Computation and Applications
rivernetwork
The "rivernetwork" Class
riverpoints
Draw Points from River Locations
routelist
Detect Multiple Routes
sequenceverts
Store Vertices in Ascending Sequence
setmouth
Specify the Segment and Vertex of the Mouth of a River...
showends
Identify Vertex Coordinates of Segment Endpoints
smallset
Dataset: Smallset
splitsegmentat
Split a Segment at a Specified Vertex
splitsegments
Split Segments by Endpoint Proximity
topologydots
Check Connectivity of a River Network Object
trimriver
Trim a River Network Object to Specified Segments
trimtopoints
Trim a River Network to a Set of X-Y Coordinates
upstream
Upstream River Distance
upstreammat
Upstream Distance Matrix
upstreammatbysurvey
Upstream Distance Matrix of All Observations of an Individual
upstreamseq
Upstream Distance Between Sequential Observations
upstreamtofrom
Upstream Distance Matrix between Two Datasets
whoconnected
Check Which Segments are Connected to a Given Segment.
xy2segvert
Convert XY Coordinates to River Locations
zoomtoseg
Zoom to segment

Files in this package

riverdist
riverdist/inst
riverdist/inst/extdata
riverdist/inst/extdata/fakefish_UTM5.sbx
riverdist/inst/extdata/fakefish_UTM5.sbn
riverdist/inst/extdata/Gulk_UTM5.prj
riverdist/inst/extdata/fakefish_UTM5.shp
riverdist/inst/extdata/Gulk_UTM5.shx
riverdist/inst/extdata/Gulk_UTM5.sbn
riverdist/inst/extdata/fakefish_UTM5.cpg
riverdist/inst/extdata/Gulk_UTM5.sbx
riverdist/inst/extdata/Gulk_UTM5.shp
riverdist/inst/extdata/Gulk_UTM5.shp.xml
riverdist/inst/extdata/fakefish_UTM5.prj
riverdist/inst/extdata/Gulk_UTM5.CPG
riverdist/inst/extdata/fakefish_UTM5.dbf
riverdist/inst/extdata/Gulk_UTM5.dbf
riverdist/inst/extdata/fakefish_UTM5.shx
riverdist/inst/doc
riverdist/inst/doc/riverdist_vignette.Rmd
riverdist/inst/doc/riverdist_vignette.R
riverdist/inst/doc/riverdist_vignette.html
riverdist/tests
riverdist/tests/testthat.R
riverdist/tests/testthat
riverdist/tests/testthat/test_riverdist.R
riverdist/NAMESPACE
riverdist/NEWS.md
riverdist/data
riverdist/data/fakefish.rda
riverdist/data/KilleyW.rda
riverdist/data/fakefish_density.rda
riverdist/data/Koyukuk0.rda
riverdist/data/Kenai1.rda
riverdist/data/smallset.rda
riverdist/data/Kenai2.rda
riverdist/data/line98.rda
riverdist/data/Kenai3.rda
riverdist/data/datalist
riverdist/data/Koyukuk2.rda
riverdist/data/abstreams0.rda
riverdist/data/Koyukuk1.rda
riverdist/data/Gulk.rda
riverdist/data/abstreams.rda
riverdist/R
riverdist/R/riverdist_1.R
riverdist/R/apps_of_direction.R
riverdist/R/plotdensity.R
riverdist/R/dissolve_zoom.R
riverdist/R/shortestroute_cleanup.R
riverdist/R/segs_direction.R
riverdist/R/dataset_help.R
riverdist/R/detectroute_riverdistance.R
riverdist/R/kfuncs.R
riverdist/R/segsplit.R
riverdist/R/detectbraiding.R
riverdist/R/apps_of_riverdistance.R
riverdist/R/riverdist.R
riverdist/vignettes
riverdist/vignettes/riverdist_vignette.Rmd
riverdist/README.md
riverdist/MD5
riverdist/build
riverdist/build/vignette.rds
riverdist/DESCRIPTION
riverdist/man
riverdist/man/riverpoints.Rd
riverdist/man/dissolve.Rd
riverdist/man/Gulk.Rd
riverdist/man/riverdistancematbysurvey.Rd
riverdist/man/matbysurveylist.Rd
riverdist/man/riverdensity.Rd
riverdist/man/riverdistancemat.Rd
riverdist/man/Koyukuk2.Rd
riverdist/man/whoconnected.Rd
riverdist/man/trimriver.Rd
riverdist/man/highlightseg.Rd
riverdist/man/plotriverdensitypoints.Rd
riverdist/man/cleanup.Rd
riverdist/man/riverdistance.Rd
riverdist/man/trimtopoints.Rd
riverdist/man/xy2segvert.Rd
riverdist/man/abstreams.Rd
riverdist/man/upstreammatbysurvey.Rd
riverdist/man/plot.riverdensity.Rd
riverdist/man/addverts.Rd
riverdist/man/fakefish.Rd
riverdist/man/removeduplicates.Rd
riverdist/man/riverdirection.Rd
riverdist/man/Kenai1.Rd
riverdist/man/smallset.Rd
riverdist/man/abstreams0.Rd
riverdist/man/riverdirectiontofrom.Rd
riverdist/man/removemicrosegs.Rd
riverdist/man/pointshp2segvert.Rd
riverdist/man/setmouth.Rd
riverdist/man/line2network.Rd
riverdist/man/zoomtoseg.Rd
riverdist/man/riverdistanceseq.Rd
riverdist/man/line98.Rd
riverdist/man/calculateconnections.Rd
riverdist/man/plotseq.Rd
riverdist/man/Kenai2.Rd
riverdist/man/routelist.Rd
riverdist/man/sequenceverts.Rd
riverdist/man/detectroute.Rd
riverdist/man/Kenai3.Rd
riverdist/man/topologydots.Rd
riverdist/man/mapbyname.Rd
riverdist/man/upstreamtofrom.Rd
riverdist/man/Koyukuk1.Rd
riverdist/man/mouthdist.Rd
riverdist/man/makeriverdensity.Rd
riverdist/man/isflowconnected.Rd
riverdist/man/splitsegmentat.Rd
riverdist/man/mouthdistbysurvey.Rd
riverdist/man/upstream.Rd
riverdist/man/pdisttot.Rd
riverdist/man/plotmatbysurveylist.Rd
riverdist/man/riverdirectionmat.Rd
riverdist/man/showends.Rd
riverdist/man/riverdist-package.Rd
riverdist/man/riverdistancetofrom.Rd
riverdist/man/removeunconnected.Rd
riverdist/man/KilleyW.Rd
riverdist/man/connectsegs.Rd
riverdist/man/splitsegments.Rd
riverdist/man/checkbraided.Rd
riverdist/man/plot.rivernetwork.Rd
riverdist/man/riverdirectionmatbysurvey.Rd
riverdist/man/kfunc.Rd
riverdist/man/riverdistancelist.Rd
riverdist/man/Koyukuk0.Rd
riverdist/man/buildsegroutes.Rd
riverdist/man/rivernetwork.Rd
riverdist/man/pdist.Rd
riverdist/man/upstreamseq.Rd
riverdist/man/homerange.Rd
riverdist/man/checkbraidedTF.Rd
riverdist/man/upstreammat.Rd
riverdist/man/buildlookup.Rd
riverdist/man/riverdirectionseq.Rd
riverdist/man/fakefish_density.Rd
riverdist/man/addcumuldist.Rd