robslope: Robust slope estimator

In robslopes: Fast Algorithms for Robust Slopes

Robust slope estimator

Description

Computes the Theil-Sen median slope, Siegel's repeated median slope or te equivariant Passing-Bablok slope. The algorithms run in an expected linearithmic time while requiring O(n) storage. They are based on Dillencourt et. al (1992), Matousek et. al (1998) and Raymaekers and Dufey (2022).

Usage

robslope(formula, data, subset, weights, na.action,
         type = c("TheilSen", "RepeatedMedian","PassingBablok"),
        alpha = NULL, beta = NULL, verbose = TRUE)

Arguments

formula	an object of class "formula" (or one that can be coerced to that class): a symbolic description of the model to be fitted. The details of model specification are given under ‘Details’.
data	an optional data frame, list or environment (or object coercible by as.data.frame to a data frame) containing the variables in the model. If not found in data, the variables are taken from environment(formula), typically the environment from which robslope is called.
subset	an optional vector specifying a subset of observations to be used in the fitting process.
weights	an optional vector of weights to be used in the fitting process. Currently not supported.
na.action	a function which indicates what should happen when the data contain NAs. The default na.exclude is applied and an informative message is given in case NAs were removed.
type	the type of robust slope estimator. Should be one of "TheilSen" (default), "RepeatedMedian" or "PassingBablok".
alpha	Determines the order statistic of the target slope. Defaults to the upper median. See below for details.
beta	Determines the inner order statistic. Only used when type = "RepeatedMedian". See below for details.
verbose	Whether or not to print out the progress of the algorithm. Defaults to TRUE.

Details

This function provides a wrapper around robslope.fit, which in turn calls the individual functions TheilSen, RepeatedMedian or PassingBablok. The details on changing the parameters alpha and beta can be found in the documentation of those respective functions.

Value

robslope returns an object of class "lm".

The generic accessor functions coefficients, fitted.values and residuals extract various useful features of the value returned by lm.

Author(s)

Jakob Raymaekers

References

Theil, H. (1950), A rank-invariant method of linear and polynomial regression analysis (Parts 1-3), Ned. Akad. Wetensch. Proc. Ser. A, 53, 386-392, 521-525, 1397-1412.

Sen, P. K. (1968). Estimates of the regression coefficient based on Kendall's tau. Journal of the American statistical association, 63(324), 1379-1389.

Dillencourt, M. B., Mount, D. M., & Netanyahu, N. S. (1992). A randomized algorithm for slope selection. International Journal of Computational Geometry & Applications, 2(01), 1-27.

Siegel, A. F. (1982). Robust regression using repeated medians. Biometrika, 69(1), 242-244.

Matousek, J., Mount, D. M., & Netanyahu, N. S. (1998). Efficient randomized algorithms for the repeated median line estimator. Algorithmica, 20(2), 136-150.

Passing, H., Bablok, W. (1983). A new biometrical procedure for testing the equality of measurements from two different analytical methods. Application of linear regression procedures for method comparison studies in clinical chemistry, Part I, Journal of clinical chemistry and clinical biochemistry, 21,709-720.

Bablok, W., Passing, H., Bender, R., Schneider, B. (1988). A general regression procedure for method transformation. Application of linear regression procedures for method comparison studies in clinical chemistry, Part III. Journal of clinical chemistry and clinical biochemistry, 26,783-790.

Raymaekers J., Dufey F. (2022). Equivariant Passing-Bablok regression in quasilinear time. (link to open access pdf)

Raymaekers (2023). "The R Journal: robslopes: Efficient Computation of the (Repeated) Median Slope", The R Journal. (link to open access pdf)

See Also

robslope.fit TheilSen RepeatedMedian PassingBablok

Examples

set.seed(123)
df <- data.frame(cbind(rnorm(20), rnorm(20)))
colnames(df) <- c("x", "y")

robslope.out <- robslope(y~x, data = df,
type = "RepeatedMedian", verbose = TRUE)

coef(robslope.out)
plot(fitted.values(robslope.out))

robslope.out <- robslope(y~x, data = df,
type = "TheilSen", verbose = TRUE)

plot(residuals(robslope.out))

robslopes documentation built on April 27, 2023, 9:11 a.m.