export_tomic_as_wide: Export T*Omic as Wide Data

In romic: R for High-Dimensional Omic Data

Export T*Omic as Wide Data

Description

abundances form a matrix with metabolites as rows and samples as columns. Use transpose to treat samples as rows filename

Usage

export_tomic_as_wide(
  tomic,
  dir_path,
  name_preamble,
  value_var = NULL,
  transpose = FALSE,
  verbose = TRUE
)

Arguments

tomic	Either a tidy_omic or triple_omic object
dir_path	path to save outputs
name_preamble	start of output file name
value_var	measurement variable to use for the matrix
transpose	if TRUE then samples will be stored as rows
verbose	extra reporting messages

Value

Export one table which contains metabolites as rows and samples as columns.

Examples

if (interactive()) {
  export_tomic_as_wide(brauer_2008_triple, "/tmp", "brauer")
}

romic documentation built on Sept. 21, 2023, 9:06 a.m.