rpostgisLT: Managing Animal Movement Data with 'PostGIS' and R
Version 0.4.0

Integrates R and the 'PostgreSQL/PostGIS' database system to build and manage animal trajectory (movement) data sets. The package relies on 'ltraj' objects from the R package 'adehabitatLT', building the analogous 'pgtraj' data structure in 'PostGIS'. Functions allow users to seamlessly transfer between 'ltraj' and 'pgtraj', as well as build new 'pgtraj' directly from location data stored in the database.

AuthorBalázs Dukai [aut] (Package creator during Google Summer of Code 2016), Mathieu Basille [aut], David Bucklin [aut, cre], Clément Calenge [aut]
Date of publication2016-11-01 18:51:55
MaintainerDavid Bucklin <dbucklin@ufl.edu>
LicenseGPL (>= 3)
Version0.4.0
URL https://github.com/mablab/rpostgisLT
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rpostgisLT")

Getting started

README.md
rpostgisLT: Database model
rpostgisLT: Use cases

Popular man pages

getPgtrajWithInfo: Get pgtraj with infolocs as a data frame (used in...
ld_opt: Quick Conversion of Objects of Class ltraj from and to data...
ltraj2pgtraj: Export ltraj object from R to a PostGIS database.
pgTrajTempT: Creates a temporary table in the 'traj' schema.
pgTrajVacuum: pgtrajVacuum VACUUM a pgtraj schema.
pgTrajViewParams: Computes the trajectory parameters (as in ltraj) for a pgtraj...
pgTrajViewStepGeom: Creates a view of the step geometries for visualization.
See all...

All man pages Function index File listing

Man pages

as_pgtraj: Imports location data from a database table into the pgtraj...
getPgtrajWithInfo: Get pgtraj with infolocs as a data frame (used in...
is_blank: Test if an argument is either NA, NULL, NaN or empty string.
ld_opt: Quick Conversion of Objects of Class ltraj from and to data...
ltraj2pgtraj: Export ltraj object from R to a PostGIS database.
pgtraj2ltraj: Import a pgtraj into an ltraj.
pgTrajDB2TempT: Insert relocations from a source table into the table...
pgTrajDrop: Delete a pgtraj/unused rows from a traj schema.
pgTrajSchema: Check/create pgtraj schema.
pgTrajTempT: Creates a temporary table in the 'traj' schema.
pgTrajVacuum: pgtrajVacuum VACUUM a pgtraj schema.
pgTrajViewParams: Computes the trajectory parameters (as in ltraj) for a pgtraj...
pgTrajViewStepGeom: Creates a view of the step geometries for visualization.
rpostgisLT: Integration of ltraj (adehabitatLT) and pgtraj (PostGIS).
test_input: Test inputs for the functions pgTrajDB2TempT()
trajSummaryViews: Create views that summarize all pgtrajes (and pgtraj bursts)...
writeInfoFromDB: Write infolocs table to database from database in...
writeInfoFromLtraj: Write infolocs table to database from ltraj in ltraj2pgtraj()

Functions

as_pgtraj Man page Source code
dl_opt Man page Source code
getPgtrajWithInfo Man page Source code
is_blank Man page Source code
ld_opt Man page Source code
ltraj2pgtraj Man page Source code
pgTrajDB2TempT Man page Source code
pgTrajTempT Man page Source code
pgTrajViewParams Man page Source code
pgTrajViewStepGeom Man page Source code
pgtraj2ltraj Man page Source code
pgtrajDrop Man page Source code
pgtrajSchema Man page Source code
pgtrajVacuum Man page Source code
rpostgisLT Man page
rpostgisLT-package Man page
test_input Man page Source code
trajSummaryViews Man page Source code
writeInfoFromDB Man page Source code
writeInfoFromLtraj Man page Source code

Files

inst
inst/sql
inst/sql/traj_schema.sql
inst/sql/insert_ltraj.sql
inst/doc
inst/doc/data-model.Rmd
inst/doc/data-model.html
inst/doc/use-cases.Rmd
inst/doc/use-cases.R
inst/doc/data-model.R
inst/doc/use-cases.html
NAMESPACE
NEWS
R
R/utils.R
R/pgTrajSchema.R
R/ltraj2pgtraj.R
R/pgTrajVacuum.R
R/pgtraj2ltraj.R
R/as_pgtraj.R
R/pgTrajDrop.R
R/rpostgisLT-package.R
vignettes
vignettes/data-model.Rmd
vignettes/fig
vignettes/fig/database_model_old.png
vignettes/fig/UC1.png
vignettes/fig/UC1.notation
vignettes/fig/UC1.di
vignettes/fig/UC1.uml
vignettes/fig/database_model.png
vignettes/use-cases.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/writeInfoFromLtraj.Rd
man/getPgtrajWithInfo.Rd
man/ltraj2pgtraj.Rd
man/as_pgtraj.Rd
man/pgTrajViewStepGeom.Rd
man/writeInfoFromDB.Rd
man/pgTrajSchema.Rd
man/pgTrajTempT.Rd
man/pgTrajDB2TempT.Rd
man/rpostgisLT.Rd
man/is_blank.Rd
man/ld_opt.Rd
man/test_input.Rd
man/pgTrajViewParams.Rd
man/trajSummaryViews.Rd
man/pgtraj2ltraj.Rd
man/pgTrajVacuum.Rd
man/pgTrajDrop.Rd
rpostgisLT documentation built on May 19, 2017, 10:43 a.m.

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