rpqlseq: Wrapper function for joint effects selection in GLMMs using...

In rpql: Regularized PQL for Joint Selection in GLMMs

Wrapper function for joint effects selection in GLMMs using regularized PQL.

Description

rpql offers fast joint selection of fixed and random effects in Generalized Linear Mixed Model (GLMMs) via regularization. The penalized quasi-likelihood (PQL) is used as a loss function, and penalties are added on to perform fixed and random effects selection. This method of joint selection in GLMMs, referred to regularized PQL, is fast compared to information criterion and hypothesis testing (Hui et al., 2016).

rpqlseq is a wrapper function to permit a sequence of tuning parameter values, which wraps around the code workhorse function rpql.

Usage

rpqlseq(y, X, Z, id, family = gaussian(), trial.size = 1, lambda, 
  pen.type = "lasso", start = NULL, cov.groups = NULL, pen.weights = NULL, 
  offset = NULL, intercept = TRUE, save.data = FALSE, 
  control = list(tol = 1e-4, maxit = 100, trace = FALSE, restarts = 5, 
  scad.a = 3.7, mcp.gamma = 2, lasso.lambda.scale = TRUE, seed = NULL), ...)

  

Arguments

y, X, Z, id, family, trial.size	As per the rpql function. Please see the help file for rpql for details on the arguments.
lambda	Either a vector containing sequence of tuning parameter values, which is applied to both penalties, or two-column matrix containing a sequence of tuning parameter values for the fixed and random effects penalty respectively.
pen.type, start, cov.groups, pen.weights, offset, intercept, save.data, control	As per the rpql function. Please see the help file for rpql for details on the arguments.
...	Not used.

Details

Please see the help file for rpql for details on how regularized PQL works. rpqlseq is simply a wrapper function to run the core rpql function multiple times, on a sequence of tuning parameter values, in order to construct a regularization path. The best models, based on different information criteria for selecting the best tuning parameter (degree of sparsity) are then returned.

Value

An object of class "rpql" containing the following elements:

best.fits	A list containing the best fitted models as based on different information criteria used to select the tuning parameter. Each element in this list has the same structure as the output from the rpql function. Please see the rpql function for details on the information criteria available as well as the nature of the output.
collect.ics	A matrix containing the values of various information criteria calculated for the sequence of lambda values supplied. The best fitted models found in best.fits is based off this matrix i.e., each element in best.fits corresponds to a model that was chosen based on minimizing the corresponding information criterion in collect.ics. Please see the rpql function for details on the information criteria available.
lambda	The sequence of tuning parameters considered.

Author(s)

Francis K.C. Hui <[e-mail]>, with contributions from Samuel Mueller <[e-mail]> and A.H. Welsh <[e-mail]>

Maintainer: Francis Hui <[e-mail]>

See Also

rpql, which is the core workhorse function that performed regularized PQL for a single set of tuning parameter values.

Examples

## Please see examples in help file for the \code{rpql} function for usage.

rpql documentation built on Aug. 20, 2023, 1:08 a.m.