sim.haplotype: Simulate artificial haplotypes.
In rres: Realized Relatedness Estimation and Simulation
Description
Usage
Arguments
Details
Value
Examples
Description
sim.haplotype returns haplotypes of the specified number of SNPs simulated under linkage equilibrium.
Usage
1
sim.haplotype(freq, nhaplo)
Arguments
freq
vector of values between 0 and 1.
nhaplo
positive integer.
Details
freq are reference allele frequencies. nhaplo haplotypes are simulated independently.
Value
A matrix of nhaplo rows and length(freq) columns. Reference alleles are coded 1, alternate alleles are coded 2.
Examples
1
2
3
4
nsnp = 7 # number of SNPs
freq = runif(nsnp, 0.05, 0.95)
nhaplo = 4 # number of founder haplotypes
sim.haplotype(freq, nhaplo)
rres documentation built on May 2, 2019, 2:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
sim.haplotype returns haplotypes of the specified number of SNPs simulated under linkage equilibrium.
Usage
1 | sim.haplotype(freq, nhaplo)
|
Arguments
freq |
vector of values between 0 and 1. |
nhaplo |
positive integer. |
Details
freq are reference allele frequencies. nhaplo haplotypes are simulated independently.
Value
A matrix of nhaplo rows and length(freq) columns. Reference alleles are coded 1, alternate alleles are coded 2.
Examples
1 2 3 4 | nsnp = 7 # number of SNPs
freq = runif(nsnp, 0.05, 0.95)
nhaplo = 4 # number of founder haplotypes
sim.haplotype(freq, nhaplo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.