rsnps: Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web

A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>), and Broad Institute 'SNP' Annotation and Proxy Search (<http://archive.broadinstitute.org/mpg/snap/ldsearch.php>). Functions are included for searching for 'SNPs' for the Broad Institute and 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.

AuthorScott Chamberlain [aut, cre], Kevin Ushey [aut], Hao Zhu [aut]
Date of publication2016-11-20 09:22:43
MaintainerScott Chamberlain <myrmecocystus@gmail.com>
LicenseMIT + file LICENSE
Version0.2.0
https://github.com/ropensci/rsnps

View on CRAN

Functions

allgensnp Man page
allphenotypes Man page
annotations Man page
download_users Man page
fetch_genotypes Man page
flip Man page
genotypes Man page
ld_search Man page
LDSearch Man page
ncbi_snp_query Man page
NCBI_snp_query Man page
ncbi_snp_query2 Man page
NCBI_snp_query2 Man page
phenotypes Man page
phenotypes_byid Man page
read_users Man page
rsnps Man page
rsnpsCache Man page
rsnps-package Man page
split_to_df Man page
swap Man page
tryget Man page
users Man page

Files

rsnps
rsnps/inst
rsnps/inst/ignore
rsnps/inst/ignore/ncbi_snp_summary.R
rsnps/inst/doc
rsnps/inst/doc/rsnps_vignette.html
rsnps/inst/doc/rsnps_vignette.Rmd
rsnps/inst/vign
rsnps/inst/vign/rsnps_vignette.md
rsnps/inst/vign/rsnps_vignette.Rmd
rsnps/tests
rsnps/tests/testthat
rsnps/tests/testthat/test-annotations.R
rsnps/tests/testthat/test-NCBI_snp_query.R
rsnps/tests/testthat/test-allphenotypes.R
rsnps/tests/testthat/test-phenotypes.R
rsnps/tests/testthat/test-NCBI_snp_query2.R
rsnps/tests/testthat/test-LDSearch.R
rsnps/tests/testthat/test-phenotypes_byid.R
rsnps/tests/testthat/test-genotypes.R
rsnps/tests/test-all.R
rsnps/NAMESPACE
rsnps/NEWS.md
rsnps/R
rsnps/R/utils.R rsnps/R/phenotypes.R rsnps/R/users.R rsnps/R/NCBI_snp_query2.R rsnps/R/allphenotypes.R rsnps/R/genotypes.R rsnps/R/annotations.R rsnps/R/fetch_genotypes.R rsnps/R/allgensnp.R rsnps/R/phenotypes_byid.R rsnps/R/download_users.R rsnps/R/NCBI_snp_query.R rsnps/R/rsnps-package.R rsnps/R/LDSearch.R
rsnps/vignettes
rsnps/vignettes/rsnps_vignette.Rmd
rsnps/README.md
rsnps/MD5
rsnps/build
rsnps/build/vignette.rds
rsnps/DESCRIPTION
rsnps/man
rsnps/man/fetch_genotypes.Rd rsnps/man/LDSearch.Rd rsnps/man/swap.Rd rsnps/man/split_to_df.Rd rsnps/man/annotations.Rd rsnps/man/phenotypes_byid.Rd rsnps/man/genotypes.Rd rsnps/man/NCBI_snp_query2.Rd rsnps/man/NCBI_snp_query.Rd rsnps/man/allphenotypes.Rd rsnps/man/allgensnp.Rd rsnps/man/rsnpsCache.Rd rsnps/man/rsnps-package.Rd rsnps/man/phenotypes.Rd rsnps/man/tryget.Rd rsnps/man/flip.Rd rsnps/man/download_users.Rd rsnps/man/read_users.Rd rsnps/man/users.Rd
rsnps/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.