rsnps: Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web

A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>), and Broad Institute 'SNP' Annotation and Proxy Search (<http://archive.broadinstitute.org/mpg/snap/ldsearch.php>). Functions are included for searching for 'SNPs' for the Broad Institute and 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.

AuthorScott Chamberlain [aut, cre], Kevin Ushey [aut], Hao Zhu [aut]
Date of publication2016-11-20 09:22:43
MaintainerScott Chamberlain <myrmecocystus@gmail.com>
LicenseMIT + file LICENSE
Version0.2.0
https://github.com/ropensci/rsnps

View on CRAN

Files in this package

rsnps
rsnps/inst
rsnps/inst/ignore
rsnps/inst/ignore/ncbi_snp_summary.R
rsnps/inst/doc
rsnps/inst/doc/rsnps_vignette.html
rsnps/inst/doc/rsnps_vignette.Rmd
rsnps/inst/vign
rsnps/inst/vign/rsnps_vignette.md
rsnps/inst/vign/rsnps_vignette.Rmd
rsnps/tests
rsnps/tests/testthat
rsnps/tests/testthat/test-annotations.R
rsnps/tests/testthat/test-NCBI_snp_query.R
rsnps/tests/testthat/test-allphenotypes.R
rsnps/tests/testthat/test-phenotypes.R
rsnps/tests/testthat/test-NCBI_snp_query2.R
rsnps/tests/testthat/test-LDSearch.R
rsnps/tests/testthat/test-phenotypes_byid.R
rsnps/tests/testthat/test-genotypes.R
rsnps/tests/test-all.R
rsnps/NAMESPACE
rsnps/NEWS.md
rsnps/R
rsnps/R/utils.R rsnps/R/phenotypes.R rsnps/R/users.R rsnps/R/NCBI_snp_query2.R rsnps/R/allphenotypes.R rsnps/R/genotypes.R rsnps/R/annotations.R rsnps/R/fetch_genotypes.R rsnps/R/allgensnp.R rsnps/R/phenotypes_byid.R rsnps/R/download_users.R rsnps/R/NCBI_snp_query.R rsnps/R/rsnps-package.R rsnps/R/LDSearch.R
rsnps/vignettes
rsnps/vignettes/rsnps_vignette.Rmd
rsnps/README.md
rsnps/MD5
rsnps/build
rsnps/build/vignette.rds
rsnps/DESCRIPTION
rsnps/man
rsnps/man/fetch_genotypes.Rd rsnps/man/LDSearch.Rd rsnps/man/swap.Rd rsnps/man/split_to_df.Rd rsnps/man/annotations.Rd rsnps/man/phenotypes_byid.Rd rsnps/man/genotypes.Rd rsnps/man/NCBI_snp_query2.Rd rsnps/man/NCBI_snp_query.Rd rsnps/man/allphenotypes.Rd rsnps/man/allgensnp.Rd rsnps/man/rsnpsCache.Rd rsnps/man/rsnps-package.Rd rsnps/man/phenotypes.Rd rsnps/man/tryget.Rd rsnps/man/flip.Rd rsnps/man/download_users.Rd rsnps/man/read_users.Rd rsnps/man/users.Rd
rsnps/LICENSE

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