A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>), and Broad Institute 'SNP' Annotation and Proxy Search (<http://archive.broadinstitute.org/mpg/snap/ldsearch.php>). Functions are included for searching for 'SNPs' for the Broad Institute and 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.
|Author||Scott Chamberlain [aut, cre], Kevin Ushey [aut], Hao Zhu [aut]|
|Date of publication||2016-11-20 09:22:43|
|Maintainer||Scott Chamberlain <email@example.com>|
|License||MIT + file LICENSE|
allgensnp: Get genotype data for all users at a particular snp.
allphenotypes: Get all phenotypes, their variations, and how many users have...
annotations: Get all phenotypes, their variations, and how many users have...
download_users: Download openSNP user files.
fetch_genotypes: Download genotype data for a user
flip: Flip Genotypes
genotypes: Get genotype data for one or multiple users.
LDSearch: Search for SNPs in Linkage Disequilibrium with a set of SNPs
NCBI_snp_query: Query NCBI's dbSNP for information on a set of SNPs
NCBI_snp_query2: Query NCBI's dbSNP for information on a set of SNPs
phenotypes: Get phenotype data for one or multiple users.
phenotypes_byid: Get all known variations and all users sharing that phenotype...
read_users: Read in openSNP user files from local storage.
rsnpsCache: rsnps environment
rsnps-package: Get SNP (Single-Nucleotide Polymorphism) Data on the Web
split_to_df: Split a Vector of Strings Following a Regular Structure
swap: Swap Elements in a Vector
users: Get openSNP users.