adapt_delta: Target average acceptance probability
In rstap: Spatial Temporal Aggregated Predictor Models via 'stan'

Details about the adapt_delta argument to rstap's modeling functions - also found in the rstanarm documentation.

For the No-U-Turn Sampler (NUTS), the variant of Hamiltonian Monte Carlo used used by rstap, adapt_delta is the target average proposal acceptance probability for adaptation.

The default value of adapt_delta is 0.95

In general you should not need to change adapt_delta unless you see a warning message about divergent transitions, in which case you can increase adapt_delta from the default to a value closer to 1 (e.g. from 0.95 to 0.99, or from 0.99 to 0.999, etc). The step size used by the numerical integrator is a function of adapt_delta in that increasing adapt_delta will result in a smaller step size and fewer divergences. Increasing adapt_delta will typically result in a slower sampler, but it will always lead to a more robust sampler.

Stan Development Team. (2017). Stan Modeling Language Users Guide and Reference Manual. http://mc-stan.org/documentation/

rstap documentation built on May 1, 2019, 9:21 p.m.