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###############################################################################
# rsubgroup package R classes
#
# This file is part of the rsubgroup package.
# Copyright (C) 2011-2019 by Martin Atzmueller
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# Contact: Martin Atzmueller (martin@atzmueller.net)
###############################################################################
.GetAllAttributesAsJArray <- function(ontology) {
attributeSetObject <- J(ontology, "getAttributes")
attributeArrayObject <- J(attributeSetObject, "toArray")
attributeArray <- .jevalArray(attributeArrayObject)
attributeIDs <- sapply(attributeArray, FUN=function(a) {J(a, "getId")}, simplify = TRUE)
return(.jarray(attributeIDs))
}
setClassUnion(".vectorOrNull", members=c("vector", "NULL"))
setClassUnion(".vectorOrCharacter", members=c("vector", "character"))
setClass("SDTaskConfig",
representation(
qf = "character",
method = "character",
k = "numeric",
minqual = "numeric",
minsize = "numeric",
mintp = "numeric",
maxlen = "numeric",
nodefaults = "logical",
relfilter = "logical",
postfilter = ".vectorOrCharacter",
attributes = ".vectorOrNull",
parfilter = "numeric",
discretize = "logical",
nbins = "numeric"
),
prototype(qf="ps", method="sdmap", k = as.integer(20),
minqual = as.integer(0), minsize = as.integer(0), mintp = as.integer(0),
maxlen = as.integer(7), nodefaults = FALSE, relfilter = FALSE,
postfilter = "", parfilter = 0.05, discretize = TRUE, nbins = 3,
attributes = NULL)
)
SDTaskConfig <- function(...){
new("SDTaskConfig", ...)
}
setClass("Pattern",
representation(
description="character",
selectors="list",
quality="numeric",
size="numeric",
parameters="list"
)
)
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