Description Usage Arguments Value Author(s) Examples
Gets the names of all the features that are volumes
1 2 | getnamesofvolumes(data = NULL,
excludeFields = c("EstimatedTotalIntraCranialVol"))
|
data |
Your subject data frame, if you have removed any columns from your data frame, the function will only return the volumes in this data frame. If this parameter is NULL then a new data frame will be randomly generated |
excludeFields |
A vector of volume names to exclude, to exclude nothing set this parameter to NULL |
A vector of the names of all the features which are volumes
Alexander Luke Spedding, alexspedding271@gmail.com
1 2 3 | getnamesofvolumes()
getnamesofvolumes(NULL, NULL)
getnamesofvolumes(NULL, excludeFields = c("left.CA1", "EstimatedTotalIntraCranialVol"))
|
Loading required package: stringr
Loading required package: gdata
sh: 1: cannot create /dev/null: Permission denied
gdata: Unable to locate valid perl interpreter
gdata:
gdata: read.xls() will be unable to read Excel XLS and XLSX files
gdata: unless the 'perl=' argument is used to specify the location of a
gdata: valid perl intrpreter.
gdata:
gdata: (To avoid display of this message in the future, please ensure
gdata: perl is installed and available on the executable search path.)
sh: 1: cannot create /dev/null: Permission denied
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLX' (Excel 97-2004) files.
gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.
gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.
Attaching package: 'gdata'
The following object is masked from 'package:stats':
nobs
The following object is masked from 'package:utils':
object.size
The following object is masked from 'package:base':
startsWith
[1] "Left.Hippocampus.HS" "left.presubiculum"
[3] "left.CA1" "left.CA2.3"
[5] "left.fimbria" "left.subiculum"
[7] "left.CA4.DG" "left.hippocampal.fissure"
[9] "Right.Hippocampus.HS" "right.presubiculum"
[11] "right.CA1" "right.CA2.3"
[13] "right.fimbria" "right.subiculum"
[15] "right.CA4.DG" "right.hippocampal.fissure"
[17] "lh.bankssts.volume" "lh.caudalanteriorcingulate.volume"
[19] "lh.caudalmiddlefrontal.volume" "lh.cuneus.volume"
[21] "lh.entorhinal.volume" "lh.fusiform.volume"
[23] "lh.inferiorparietal.volume" "lh.inferiortemporal.volume"
[25] "lh.isthmuscingulate.volume" "lh.lateraloccipital.volume"
[27] "lh.lateralorbitofrontal.volume" "lh.lingual.volume"
[29] "lh.medialorbitofrontal.volume" "lh.middletemporal.volume"
[31] "lh.parahippocampal.volume" "lh.paracentral.volume"
[33] "lh.parsopercularis.volume" "lh.parsorbitalis.volume"
[35] "lh.parstriangularis.volume" "lh.pericalcarine.volume"
[37] "lh.postcentral.volume" "lh.posteriorcingulate.volume"
[39] "lh.precentral.volume" "lh.precuneus.volume"
[41] "lh.rostralanteriorcingulate.volume" "lh.rostralmiddlefrontal.volume"
[43] "lh.superiorfrontal.volume" "lh.superiorparietal.volume"
[45] "lh.superiortemporal.volume" "lh.supramarginal.volume"
[47] "lh.frontalpole.volume" "lh.temporalpole.volume"
[49] "lh.transversetemporal.volume" "lh.insula.volume"
[51] "rh.bankssts.volume" "rh.caudalanteriorcingulate.volume"
[53] "rh.caudalmiddlefrontal.volume" "rh.cuneus.volume"
[55] "rh.entorhinal.volume" "rh.fusiform.volume"
[57] "rh.inferiorparietal.volume" "rh.inferiortemporal.volume"
[59] "rh.isthmuscingulate.volume" "rh.lateraloccipital.volume"
[61] "rh.lateralorbitofrontal.volume" "rh.lingual.volume"
[63] "rh.medialorbitofrontal.volume" "rh.middletemporal.volume"
[65] "rh.parahippocampal.volume" "rh.paracentral.volume"
[67] "rh.parsopercularis.volume" "rh.parsorbitalis.volume"
[69] "rh.parstriangularis.volume" "rh.pericalcarine.volume"
[71] "rh.postcentral.volume" "rh.posteriorcingulate.volume"
[73] "rh.precentral.volume" "rh.precuneus.volume"
[75] "rh.rostralanteriorcingulate.volume" "rh.rostralmiddlefrontal.volume"
[77] "rh.superiorfrontal.volume" "rh.superiorparietal.volume"
[79] "rh.superiortemporal.volume" "rh.supramarginal.volume"
[81] "rh.frontalpole.volume" "rh.temporalpole.volume"
[83] "rh.transversetemporal.volume" "rh.insula.volume"
[85] "Left.Lateral.Ventricle" "Left.Inf.Lat.Vent"
[87] "Left.Cerebellum.White.Matter" "Left.Cerebellum.Cortex"
[89] "Left.Thalamus.Proper" "Left.Caudate"
[91] "Left.Putamen" "Left.Pallidum"
[93] "X3rd.Ventricle" "X4th.Ventricle"
[95] "Brain.Stem" "Left.Hippocampus"
[97] "Left.Amygdala" "CSF"
[99] "Left.Accumbens.area" "Left.VentralDC"
[101] "Left.vessel" "Left.choroid.plexus"
[103] "Right.Lateral.Ventricle" "Right.Inf.Lat.Vent"
[105] "Right.Cerebellum.White.Matter" "Right.Cerebellum.Cortex"
[107] "Right.Thalamus.Proper" "Right.Caudate"
[109] "Right.Putamen" "Right.Pallidum"
[111] "Right.Hippocampus" "Right.Amygdala"
[113] "Right.Accumbens.area" "Right.VentralDC"
[115] "Right.vessel" "Right.choroid.plexus"
[117] "X5th.Ventricle" "WM.hypointensities"
[119] "Left.WM.hypointensities" "Right.WM.hypointensities"
[121] "non.WM.hypointensities" "Left.non.WM.hypointensities"
[123] "Right.non.WM.hypointensities" "Optic.Chiasm"
[125] "CC_Posterior" "CC_Mid_Posterior"
[127] "CC_Central" "CC_Mid_Anterior"
[129] "CC_Anterior" "BrainSegVol"
[131] "BrainSegVolNotVent" "BrainSegVolNotVentSurf"
[133] "lhCortexVol" "rhCortexVol"
[135] "CortexVol" "lhCorticalWhiteMatterVol"
[137] "rhCorticalWhiteMatterVol" "CorticalWhiteMatterVol"
[139] "SubCortGrayVol" "TotalGrayVol"
[141] "SupraTentorialVol" "SupraTentorialVolNotVent"
[143] "SupraTentorialVolNotVentVox" "MaskVol"
[145] "BrainSegVol.to.eTIV" "MaskVol.to.eTIV"
[147] "lhSurfaceHoles" "rhSurfaceHoles"
[149] "SurfaceHoles"
[1] "Left.Hippocampus.HS" "left.presubiculum"
[3] "left.CA1" "left.CA2.3"
[5] "left.fimbria" "left.subiculum"
[7] "left.CA4.DG" "left.hippocampal.fissure"
[9] "Right.Hippocampus.HS" "right.presubiculum"
[11] "right.CA1" "right.CA2.3"
[13] "right.fimbria" "right.subiculum"
[15] "right.CA4.DG" "right.hippocampal.fissure"
[17] "lh.bankssts.volume" "lh.caudalanteriorcingulate.volume"
[19] "lh.caudalmiddlefrontal.volume" "lh.cuneus.volume"
[21] "lh.entorhinal.volume" "lh.fusiform.volume"
[23] "lh.inferiorparietal.volume" "lh.inferiortemporal.volume"
[25] "lh.isthmuscingulate.volume" "lh.lateraloccipital.volume"
[27] "lh.lateralorbitofrontal.volume" "lh.lingual.volume"
[29] "lh.medialorbitofrontal.volume" "lh.middletemporal.volume"
[31] "lh.parahippocampal.volume" "lh.paracentral.volume"
[33] "lh.parsopercularis.volume" "lh.parsorbitalis.volume"
[35] "lh.parstriangularis.volume" "lh.pericalcarine.volume"
[37] "lh.postcentral.volume" "lh.posteriorcingulate.volume"
[39] "lh.precentral.volume" "lh.precuneus.volume"
[41] "lh.rostralanteriorcingulate.volume" "lh.rostralmiddlefrontal.volume"
[43] "lh.superiorfrontal.volume" "lh.superiorparietal.volume"
[45] "lh.superiortemporal.volume" "lh.supramarginal.volume"
[47] "lh.frontalpole.volume" "lh.temporalpole.volume"
[49] "lh.transversetemporal.volume" "lh.insula.volume"
[51] "rh.bankssts.volume" "rh.caudalanteriorcingulate.volume"
[53] "rh.caudalmiddlefrontal.volume" "rh.cuneus.volume"
[55] "rh.entorhinal.volume" "rh.fusiform.volume"
[57] "rh.inferiorparietal.volume" "rh.inferiortemporal.volume"
[59] "rh.isthmuscingulate.volume" "rh.lateraloccipital.volume"
[61] "rh.lateralorbitofrontal.volume" "rh.lingual.volume"
[63] "rh.medialorbitofrontal.volume" "rh.middletemporal.volume"
[65] "rh.parahippocampal.volume" "rh.paracentral.volume"
[67] "rh.parsopercularis.volume" "rh.parsorbitalis.volume"
[69] "rh.parstriangularis.volume" "rh.pericalcarine.volume"
[71] "rh.postcentral.volume" "rh.posteriorcingulate.volume"
[73] "rh.precentral.volume" "rh.precuneus.volume"
[75] "rh.rostralanteriorcingulate.volume" "rh.rostralmiddlefrontal.volume"
[77] "rh.superiorfrontal.volume" "rh.superiorparietal.volume"
[79] "rh.superiortemporal.volume" "rh.supramarginal.volume"
[81] "rh.frontalpole.volume" "rh.temporalpole.volume"
[83] "rh.transversetemporal.volume" "rh.insula.volume"
[85] "Left.Lateral.Ventricle" "Left.Inf.Lat.Vent"
[87] "Left.Cerebellum.White.Matter" "Left.Cerebellum.Cortex"
[89] "Left.Thalamus.Proper" "Left.Caudate"
[91] "Left.Putamen" "Left.Pallidum"
[93] "X3rd.Ventricle" "X4th.Ventricle"
[95] "Brain.Stem" "Left.Hippocampus"
[97] "Left.Amygdala" "CSF"
[99] "Left.Accumbens.area" "Left.VentralDC"
[101] "Left.vessel" "Left.choroid.plexus"
[103] "Right.Lateral.Ventricle" "Right.Inf.Lat.Vent"
[105] "Right.Cerebellum.White.Matter" "Right.Cerebellum.Cortex"
[107] "Right.Thalamus.Proper" "Right.Caudate"
[109] "Right.Putamen" "Right.Pallidum"
[111] "Right.Hippocampus" "Right.Amygdala"
[113] "Right.Accumbens.area" "Right.VentralDC"
[115] "Right.vessel" "Right.choroid.plexus"
[117] "X5th.Ventricle" "WM.hypointensities"
[119] "Left.WM.hypointensities" "Right.WM.hypointensities"
[121] "non.WM.hypointensities" "Left.non.WM.hypointensities"
[123] "Right.non.WM.hypointensities" "Optic.Chiasm"
[125] "CC_Posterior" "CC_Mid_Posterior"
[127] "CC_Central" "CC_Mid_Anterior"
[129] "CC_Anterior" "BrainSegVol"
[131] "BrainSegVolNotVent" "BrainSegVolNotVentSurf"
[133] "lhCortexVol" "rhCortexVol"
[135] "CortexVol" "lhCorticalWhiteMatterVol"
[137] "rhCorticalWhiteMatterVol" "CorticalWhiteMatterVol"
[139] "SubCortGrayVol" "TotalGrayVol"
[141] "SupraTentorialVol" "SupraTentorialVolNotVent"
[143] "SupraTentorialVolNotVentVox" "MaskVol"
[145] "BrainSegVol.to.eTIV" "MaskVol.to.eTIV"
[147] "lhSurfaceHoles" "rhSurfaceHoles"
[149] "SurfaceHoles" "EstimatedTotalIntraCranialVol"
[1] "Left.Hippocampus.HS" "left.presubiculum"
[3] "left.CA2.3" "left.fimbria"
[5] "left.subiculum" "left.CA4.DG"
[7] "left.hippocampal.fissure" "Right.Hippocampus.HS"
[9] "right.presubiculum" "right.CA1"
[11] "right.CA2.3" "right.fimbria"
[13] "right.subiculum" "right.CA4.DG"
[15] "right.hippocampal.fissure" "lh.bankssts.volume"
[17] "lh.caudalanteriorcingulate.volume" "lh.caudalmiddlefrontal.volume"
[19] "lh.cuneus.volume" "lh.entorhinal.volume"
[21] "lh.fusiform.volume" "lh.inferiorparietal.volume"
[23] "lh.inferiortemporal.volume" "lh.isthmuscingulate.volume"
[25] "lh.lateraloccipital.volume" "lh.lateralorbitofrontal.volume"
[27] "lh.lingual.volume" "lh.medialorbitofrontal.volume"
[29] "lh.middletemporal.volume" "lh.parahippocampal.volume"
[31] "lh.paracentral.volume" "lh.parsopercularis.volume"
[33] "lh.parsorbitalis.volume" "lh.parstriangularis.volume"
[35] "lh.pericalcarine.volume" "lh.postcentral.volume"
[37] "lh.posteriorcingulate.volume" "lh.precentral.volume"
[39] "lh.precuneus.volume" "lh.rostralanteriorcingulate.volume"
[41] "lh.rostralmiddlefrontal.volume" "lh.superiorfrontal.volume"
[43] "lh.superiorparietal.volume" "lh.superiortemporal.volume"
[45] "lh.supramarginal.volume" "lh.frontalpole.volume"
[47] "lh.temporalpole.volume" "lh.transversetemporal.volume"
[49] "lh.insula.volume" "rh.bankssts.volume"
[51] "rh.caudalanteriorcingulate.volume" "rh.caudalmiddlefrontal.volume"
[53] "rh.cuneus.volume" "rh.entorhinal.volume"
[55] "rh.fusiform.volume" "rh.inferiorparietal.volume"
[57] "rh.inferiortemporal.volume" "rh.isthmuscingulate.volume"
[59] "rh.lateraloccipital.volume" "rh.lateralorbitofrontal.volume"
[61] "rh.lingual.volume" "rh.medialorbitofrontal.volume"
[63] "rh.middletemporal.volume" "rh.parahippocampal.volume"
[65] "rh.paracentral.volume" "rh.parsopercularis.volume"
[67] "rh.parsorbitalis.volume" "rh.parstriangularis.volume"
[69] "rh.pericalcarine.volume" "rh.postcentral.volume"
[71] "rh.posteriorcingulate.volume" "rh.precentral.volume"
[73] "rh.precuneus.volume" "rh.rostralanteriorcingulate.volume"
[75] "rh.rostralmiddlefrontal.volume" "rh.superiorfrontal.volume"
[77] "rh.superiorparietal.volume" "rh.superiortemporal.volume"
[79] "rh.supramarginal.volume" "rh.frontalpole.volume"
[81] "rh.temporalpole.volume" "rh.transversetemporal.volume"
[83] "rh.insula.volume" "Left.Lateral.Ventricle"
[85] "Left.Inf.Lat.Vent" "Left.Cerebellum.White.Matter"
[87] "Left.Cerebellum.Cortex" "Left.Thalamus.Proper"
[89] "Left.Caudate" "Left.Putamen"
[91] "Left.Pallidum" "X3rd.Ventricle"
[93] "X4th.Ventricle" "Brain.Stem"
[95] "Left.Hippocampus" "Left.Amygdala"
[97] "CSF" "Left.Accumbens.area"
[99] "Left.VentralDC" "Left.vessel"
[101] "Left.choroid.plexus" "Right.Lateral.Ventricle"
[103] "Right.Inf.Lat.Vent" "Right.Cerebellum.White.Matter"
[105] "Right.Cerebellum.Cortex" "Right.Thalamus.Proper"
[107] "Right.Caudate" "Right.Putamen"
[109] "Right.Pallidum" "Right.Hippocampus"
[111] "Right.Amygdala" "Right.Accumbens.area"
[113] "Right.VentralDC" "Right.vessel"
[115] "Right.choroid.plexus" "X5th.Ventricle"
[117] "WM.hypointensities" "Left.WM.hypointensities"
[119] "Right.WM.hypointensities" "non.WM.hypointensities"
[121] "Left.non.WM.hypointensities" "Right.non.WM.hypointensities"
[123] "Optic.Chiasm" "CC_Posterior"
[125] "CC_Mid_Posterior" "CC_Central"
[127] "CC_Mid_Anterior" "CC_Anterior"
[129] "BrainSegVol" "BrainSegVolNotVent"
[131] "BrainSegVolNotVentSurf" "lhCortexVol"
[133] "rhCortexVol" "CortexVol"
[135] "lhCorticalWhiteMatterVol" "rhCorticalWhiteMatterVol"
[137] "CorticalWhiteMatterVol" "SubCortGrayVol"
[139] "TotalGrayVol" "SupraTentorialVol"
[141] "SupraTentorialVolNotVent" "SupraTentorialVolNotVentVox"
[143] "MaskVol" "BrainSegVol.to.eTIV"
[145] "MaskVol.to.eTIV" "lhSurfaceHoles"
[147] "rhSurfaceHoles" "SurfaceHoles"
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