getBrukerMCFSampleSet: Extract a sample set from a Bruker MCF directory

In rtms: R Toolkit for Mass Spectrometry

Extract a sample set from a Bruker MCF directory

Description

Extracts an RTMS sample object (of class rtmsSampleSet) from a multi- acquisition Bruker MCF directory opened using an RTMS reader object (of class rtmsBrukerMCFReader). A vector numeric indices is used to identify which acquisitions the sample set should be extracted from.

Usage

## S3 method for class 'rtmsBrukerMCFReader'
getSampleSet(x, peaks, ...)

getBrukerMCFSampleSet(reader, peaks, indices)

Arguments

x	The MCF reader object
peaks	A list of peak objects of class rtmsPeak
...	Additional parameters
reader	An RTMS reader object of class rtmsBrukerMCFReader
indices	A vector of numeric indices specifying which acquisitions the sample set should be extracted from

Value

An RTMS sample set object of class rtmsSampleSet

Functions

• getSampleSet(rtmsBrukerMCFReader): The S3 method getSample for objects of class rtmsBrukerMCFReader; calls getBrukerMCFSampleSet

rtms documentation built on June 7, 2023, 5:59 p.m.