rt_data_code: Identify and extract Data and Code statements in TXT files.

In rtransparency: Identifies Indicators of Transparency

Identify and extract Data and Code statements in TXT files.

Description

Takes a TXT file and returns data related to the presence of Data and/or Code statements, including whether Data and/or Code statements exist. If such statements exist, it extracts them.

Usage

rt_data_code(filename)

Arguments

filename

The name of the TXT file as a string.

Value

A dataframe of results. It returns whether text suggesting the presence of data or code was found, and if so, what this text was.

Examples

# Write a short example article to a temporary text file.
filepath <- file.path(tempdir(), "PMID00000000-PMC0000000.txt")
writeLines(c(
  "To our knowledge, this is the first study of its kind.",
  "Conflicts of interest: none declared.",
  "This work was supported by the National Institutes of Health (R01-000000).",
  "The protocol was registered at ClinicalTrials.gov (NCT00000000).",
  "All data and code are available at https://github.com/example/repo.",
  "We independently replicated the original analysis."
), filepath)

# Identify and extract data and code availability.
results_table <- rt_data_code(filepath)

rtransparency documentation built on July 1, 2026, 9:07 a.m.