rt_data_code_pmc_list: Identify and extract Data and Code sharing from a list of PMC...

In rtransparency: Identifies Indicators of Transparency

Identify and extract Data and Code sharing from a list of PMC XML files.

Description

Takes a list of PMC XML files and returns data related to the presence of Data or Code, including whether Data or Code have been shared. If Data or Code exist, it will extract the relevant text for each.

Usage

rt_data_code_pmc_list(filenames, remove_ns = TRUE, specificity = "low")

Arguments

filenames	A list of the PMC XML filenames as strings.
remove_ns	TRUE if an XML namespace exists, else FALSE (default).
specificity	Retained for backward compatibility; see rt_data_code_pmc.

Value

A dataframe of results, one row per file.

Examples

# Paths to PMC XML files
filepath <- system.file(
  "extdata", "PMID32171256-PMC7071725.xml", package = "rtransparency"
)
filepaths <- list(filepath)

# Identify and extract indicators of data and code sharing
results_table <- rt_data_code_pmc_list(filepaths, remove_ns = TRUE)

rtransparency documentation built on July 1, 2026, 9:07 a.m.