a_freq_list: Convert data frame of allele frequencies to nested lists

In rubias: Bayesian Inference from the Conditional Genetic Stock Identification Model

Description

List-izes the output of reference_allele_counts into a usable format for allelic_list

Usage

a_freq_list(D, pop_level = "collection")

Arguments

D	the long-format dataframe of counts by collection, locus, and allele, output by reference_allele_counts, to be made into a nested list

Value

a_freq_list returns a list named by loci, each element of which is a matrix containing that locus's allele count data. Rows in the matrix mark alleles, and columns collections

Examples

 # Generate a list of individual genotypes by allele from
 # the alewife data's reference allele count tables
 example(reference_allele_counts)
 ale_ac <- a_freq_list(ale_rac)

rubias documentation built on Feb. 10, 2022, 1:06 a.m.