chinook: SNP data from chinook reference populations

In rubias: Bayesian Inference from the Conditional Genetic Stock Identification Model

Description

Chinook salmon baseline data similar to that which can be downloaded from https://datadryad.org/stash/dataset/doi:10.5061/dryad.574sv. This data set includes 91 SNPs and 7301 fish and is what the Dryad data became after we converted from TaqMan to SNPtype assays (being forced to toss some loci) and tossed out a bunch of lousy historical samples from Trinity River.

Format

A tbl_df-ed (from dplyr) data frame with 7,301 rows and 185 variables. The first three columns are

repunit (chr)

the reporting unit that the individual is in

pop (chr)

the population from which the individual was sampled

ID (chr)

Unique identifier of the individual fish

The remaining columns are two columns for each locus. These columns are named like, "Locus.1" and "Locus.2" for the first and second gene copies at that locus. For example, "Ots_104569-86.1" and "Ots_104569-86.2". The locus columns are ints and missing data is denoted by NA.

Source

https://datadryad.org/stash/dataset/doi:10.5061/dryad.574sv

rubias documentation built on Feb. 10, 2022, 1:06 a.m.