rusda: Interface to USDA Databases
Version 1.0.8

An interface to the web service methods provided by the United States Department of Agriculture (USDA). The Agricultural Research Service (ARS) provides a large set of databases. The current version of the package holds interfaces to the Systematic Mycology and Microbiology Laboratory (SMML), which consists of four databases: Fungus-Host Distributions, Specimens, Literature and the Nomenclature database. It provides functions for querying these databases. The main function is \code{associations}, which allows searching for fungus-host combinations.

Browse man pages Browse package API and functions Browse package files

AuthorFranz-Sebastian Krah
Date of publication2016-04-03 00:24:19
MaintainerFranz-Sebastian Krah <f.krah@mailbox.org>
LicenseGPL (>= 2)
Version1.0.8
URL http://www.usda.gov/wps/portal/usda/usdahome http://nt.ars-grin.gov/fungaldatabases/index.cfm
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("rusda")

Man pages

associations: Downloads associations for input species from SMML...
literature: Downloads literature from SMML Literature DB
meta_smml: Downloads and evaluate species presence in SMML DBs
rusda-internal: Internal rusda Functions
rusda-package: Interface to USDA Databases
substrate: Downloads substrate data from SMML Nomenclature DB
synonyms_smml: Downloads synonym data from SMML Nomenclature DB

Functions

associations Man page Source code
clean_step Man page Source code
getCOND Man page Source code
getHF Man page Source code
getMETA Man page Source code
getSYNS Man page Source code
literature Man page Source code
meta_smml Man page Source code
ncbiSpecies Man page Source code
rusda Man page
rusda-package Man page
substrate Man page Source code
synonyms_smml Man page Source code

Files

NAMESPACE
R
R/clean_step.R
R/getCOND.R
R/literature.R
R/associations.R
R/meta_smml.R
R/substrate.R
R/getMETA.R
R/getHF.R
R/getSYNS.R
R/ncbiSpecies.R
R/synonyms_smml.R
MD5
DESCRIPTION
man
man/substrate.Rd
man/rusda-internal.Rd
man/literature.Rd
man/synonyms_smml.Rd
man/meta_smml.Rd
man/associations.Rd
man/rusda-package.Rd
rusda documentation built on May 19, 2017, 3:11 p.m.