rusda: Interface to USDA Databases

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An interface to the web service methods provided by the United States Department of Agriculture (USDA). The Agricultural Research Service (ARS) provides a large set of databases. The current version of the package holds interfaces to the Systematic Mycology and Microbiology Laboratory (SMML), which consists of four databases: Fungus-Host Distributions, Specimens, Literature and the Nomenclature database. It provides functions for querying these databases. The main function is \code{associations}, which allows searching for fungus-host combinations.

Author
Franz-Sebastian Krah
Date of publication
2016-04-03 00:24:19
Maintainer
Franz-Sebastian Krah <f.krah@mailbox.org>
License
GPL (>= 2)
Version
1.0.8
URLs

View on CRAN

Man pages

associations
Downloads associations for input species from SMML...
literature
Downloads literature from SMML Literature DB
meta_smml
Downloads and evaluate species presence in SMML DBs
rusda-internal
Internal rusda Functions
rusda-package
Interface to USDA Databases
substrate
Downloads substrate data from SMML Nomenclature DB
synonyms_smml
Downloads synonym data from SMML Nomenclature DB

Files in this package

rusda
rusda/NAMESPACE
rusda/R
rusda/R/clean_step.R
rusda/R/getCOND.R
rusda/R/literature.R
rusda/R/associations.R
rusda/R/meta_smml.R
rusda/R/substrate.R
rusda/R/getMETA.R
rusda/R/getHF.R
rusda/R/getSYNS.R
rusda/R/ncbiSpecies.R
rusda/R/synonyms_smml.R
rusda/MD5
rusda/DESCRIPTION
rusda/man
rusda/man/substrate.Rd
rusda/man/rusda-internal.Rd
rusda/man/literature.Rd
rusda/man/synonyms_smml.Rd
rusda/man/meta_smml.Rd
rusda/man/associations.Rd
rusda/man/rusda-package.Rd