miVennPlot: Species specific expression analysis: miVennPlot

In sRNAGenetic: Analysis of Small RNA Expression Changes in Hybrid Plants

Species specific expression analysis: miVennPlot

Description

miVennPlot: generate the Venn diagram with the specific expression information of miRNAs.

Usage

miVennPlot(P1_RPM, P2_RPM, F1_RPM, rpm_threshold = 1)

Arguments

P1_RPM	A dataframe. The rpm data of miRNA from the P1 species. The first column must be the miRNA sequence. Others are listed as the rpm of miRNA, and each column denotes one biological replicate of the sample.
P2_RPM	A dataframe. Similar with P1_RPM, the rpm data of miRNA from the P2 species.
F1_RPM	A dataframe. Similar with P1_RPM, the rpm data of miRNA from the F1 species.
rpm_threshold	A numeric. the average of rpm value among all the biological replicates. By default, the average of rpm more than or equal to 1 is retained.

Value

The Venn diagram with the specific expression information of miRNAs.

Examples

##Drawing
miVennPlot(P1_RPM = P1_miRNA_rpm,
           P2_RPM = P2_miRNA_rpm,
           F1_RPM = F1_miRNA_rpm,rpm_threshold = 1)

sRNAGenetic documentation built on March 21, 2022, 9:10 a.m.