mirnapredata: Generate the data of miRNA base frequence in each position
In sRNAGenetic: Analysis of Small RNA Expression Changes in Hybrid Plants

mirnapredata

R Documentation

Generate the data of miRNA base frequence in each position

Description

Generally, the "T" base account for the highest percentage of miRNA in the first position.The function of "mirnapredata" can provide the input data for the next drawing of miRNA base distribution in each position.

Usage

mirnapredata(mirnaseq_dataframe)

Arguments

mirnaseq_dataframe

A dataframe. The first column must be the sRNA sequence.

Value

A dataframe. About the output results, the first column is the base, the second column is the base frequency, the third column is the position.

Examples

##P1
P1_miRNA_data <- mirnapredata(mirnaseq_dataframe = P1_miRNA_count)
##P2
P2_miRNA_data <- mirnapredata(mirnaseq_dataframe = P2_miRNA_count)
##F1
F1_miRNA_data <- mirnapredata(mirnaseq_dataframe = F1_miRNA_count)

sRNAGenetic documentation built on March 21, 2022, 9:10 a.m.