API for saasCNV
Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data
| Global functions | |
|---|---|
| BAF2mBAF | Man page Source code |
| ComputeZ.fromS.R | Man page |
| ComputeZ.fromS.R.partial | Man page |
| GC.adjust | Man page Source code |
| Mode | Man page Source code |
| NGS.CNV | Man page |
| SNP.CNV | Man page |
| `ComputeZ.fromS.R.partial` | Source code |
| `ComputeZ.fromS.R` | Source code |
| `compute.var` | Source code |
| `computeBeta` | Source code |
| `computeMoments` | Source code |
| `computeTiltDirect` | Source code |
| `computeZ.onechange.sample` | Source code |
| `computeZ.onechange` | Source code |
| `computeZ.squarewave.sample` | Source code |
| `dchi` | Source code |
| `fcompute.max.Z` | Source code |
| `fmscbs` | Source code |
| `fscan.max` | Source code |
| `getCutoffMultisampleWeightedChisq` | Source code |
| `matrix.max` | Source code |
| `mscbs.classify` | Source code |
| `pmarg.sumweightedchisq` | Source code |
| `pvalueMultisampleWeightedChisq` | Source code |
| `vu` | Source code |
| check.overlap | Man page Source code |
| cnv.call | Man page Source code |
| cnv.data | Man page Source code |
| cnv.data.chr | Man page Source code |
| compute.baseline | Man page Source code |
| compute.baseline.manual | Man page Source code |
| compute.var | Man page |
| computeBeta | Man page |
| computeMoments | Man page |
| computeTiltDirect | Man page |
| computeZ.onechange | Man page |
| computeZ.onechange.sample | Man page |
| computeZ.squarewave.sample | Man page |
| dchi | Man page |
| delta.sd | Man page Source code |
| diagnosis.QQ.plot | Man page Source code |
| diagnosis.cluster.plot | Man page Source code |
| diagnosis.seg.plot.chr | Man page Source code |
| fcompute.max.Z | Man page |
| fmscbs | Man page |
| fscan.max | Man page |
| genome.wide.plot | Man page Source code |
| getCutoffMultisampleWeightedChisq | Man page |
| impute.missing.data | Man page Source code |
| joint.segmentation | Man page Source code |
| matrix.max | Man page |
| merging.segments | Man page Source code |
| merging.segments.chr | Man page Source code |
| mscbs.classify | Man page |
| pmarg.sumweightedchisq | Man page |
| pvalueMultisampleWeightedChisq | Man page |
| reannotate.CNV.res | Man page Source code |
| saasCNV | Man page |
| saasCNV-package | Man page |
| seg.summary | Man page |
| seq.cnv | Man page |
| seq.data | Man page |
| seq.segs | Man page |
| seq.segs.merge | Man page |
| snp.cnv | Man page |
| snp.cnv.anno | Man page |
| snp.cnv.data | Man page Source code |
| snp.cnv.refine | Man page |
| snp.cnv.refine.anno | Man page |
| snp.data | Man page |
| snp.refine.boundary | Man page Source code |
| snp.segs | Man page |
| snp.segs.merge | Man page |
| snp_table | Man page |
| vcf2txt | Man page Source code |
| vcf_table | Man page |
| vu | Man page |
