Man pages for saasCNV
Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data
| cnv.call | CNV Calling from Sequencing Data |
| cnv.data | Construct Data Frame for CNV Inference with NGS Data |
| diagnosis.cluster.plot | Visualize Genome-Wide SCNA Profile in 2D Cluster Plot |
| diagnosis.seg.plot.chr | Visualize Segmentation Results for Diagnosis |
| GC.adjust | GC Content Adjustment |
| genome.wide.plot | Visualize Genome-Wide SCNA Profile |
| internals | Internal Functions and Data |
| joint.segmentation | Joint Segmentation on log2ratio and log2mBAF Dimensions |
| merging.segments | Merge Adjacent Segments |
| NGS.CNV | CNV Analysis Pipeline for WGS and WES Data |
| reannotate.CNV.res | Gene Annotation |
| saasCNV-package | Somatic Copy Number Alteration Analysis Using Sequencing and... |
| SNP.CNV | CNV Analysis Pipeline for SNP array Data |
| snp.cnv.data | Construct Data Frame for CNV Inference with SNP Array Data |
| snp.refine.boundary | Refine Segment Boundaries |
| vcf2txt | Covert VCF File to A Data Frame |
