In samr: SAM: Significance Analysis of Microarrays

Web-enabled and Cross-platform SAM via Shiny

First make sure you have a very recent version of R or RStudio.

Next install required packages. Cut and paste what's below in an R session.

install.packages(c("samr", "matrixStats", "GSA", "shiny", "openxlsx"))
source("http://bioconductor.org/biocLite.R")
biocLite("impute")

You only need to do this once.

Then, you may run SAM any time in an R session as follows.

library(shiny)
runGitHub("SAM", "MikeJSeo")

That will bring up a browser window with a user interface. More details are provided in the manual sam.pdf in this directory

Please post to the group regarding any issues. This will help us ensure we have all the kinks ironed out before merging the code into the next version of the samr package.

Thank you,
Michael Seo

samr documentation built on May 1, 2019, 7:49 p.m.