Nothing
knitr::opts_chunk$set( collapse = TRUE, comment = "#>" )
The sassy system gives you capabilities that few other R packages can match. The system not only support reports with by-groups. You can even apply a by-group to a figure.
Note the following about this example:
add_content()
function, just
like the figures in the previous example.page_by()
function on the create_report()
statement generates the
paging for both the report and plot.library(ggplot2) library(sassy) options("logr.autolog" = TRUE, "logr.notes" = FALSE) # Get path to temp directory tmp <- tempdir() # Get path to sample data pkg <- system.file("extdata", package = "sassy") # Open log lgpth <- log_open(file.path(tmp, "example6.log")) # Prepare Data ------------------------------------------------------------ sep("Prepare Data") put("Create libname for csv data") libname(sdtm, pkg, "csv") put("Perform joins and basic filters") datastep(sdtm$DM, merge = sdtm$VS, merge_by = c("USUBJID" = "USUBJID"), keep = v(USUBJID, ARMCD, ARM, VSTESTCD, VSTEST, VSORRES, VISITNUM, VISIT), where = expression(VSTESTCD %in% c("SYSBP", "DIABP", "PULSE", "TEMP", "RESP") & ARMCD != "SCRNFAIL"), {}) -> prep put("Change VISIT to factor so it sorts properly") prep$VISIT <- factor(prep$VISIT, levels = c("DAY 1", "WEEK 2", "WEEK 4", "WEEK 6","WEEK 8", "WEEK 12", "WEEK 16")) put("Group and summarize") proc_means(prep, var = VSORRES, class = v(ARM, VSTEST, VISITNUM, VISIT), options = v(nway, nofreq, notype), stats = mean) |> datastep(where = expression(VISITNUM > 0 & VISITNUM < 20),{}) -> final put("Rename variables for clarity") names(final) <- toupper(labels(final)) # Create Plots ------------------------------------------------------------ sep("Create plots and print report") put("Create plot") p <- final |> ggplot(mapping = aes(y = MEAN, x = VISIT , group = ARM)) + geom_point(aes(shape = ARM, color = ARM)) + geom_line(aes(linetype = ARM, color = ARM)) + scale_x_discrete(name = "Visit") + scale_y_continuous(name = "Value") # Create Report ----------------------------------------------------------- put("Construct output path") pth <- file.path(tmp, "output/example6.rtf") put("Define report object") rpt <- create_report(pth, output_type = "RTF", font = "Arial") |> set_margins(top = 1, bottom = 1) |> page_header("Sponsor: Company", "Study: ABC") |> page_by(VSTEST, "Vital Sign: ", blank_row = "none") |> titles("Figure 1.0", "Vital Signs Change from Baseline", "Safety Population", bold = TRUE) |> add_content(create_plot(p, 4.5, 9)) |> footnotes("R Program: VS_Figure.R") |> page_footer(paste0("Date Produced: ", fapply(Sys.time(), "%d%b%y %H:%M")), right = "Page [pg] of [tpg]") put("Write report to file system") write_report(rpt) put("Close log") log_close() # View report # file.show(pth) # View log # file.show(lgpth)
And here are the first three pages of the report:
Here is the log for the above program:
========================================================================= Log Path: C:/Users/dbosa/AppData/Local/Temp/Rtmpo1naKK/log/example6.log Program Path: C:/packages/Testing/procs/ProcsFigBy.R Working Directory: C:/packages/Testing/procs User Name: dbosa R Version: 4.3.1 (2023-06-16 ucrt) Machine: SOCRATES x86-64 Operating System: Windows 10 x64 build 22621 Base Packages: stats graphics grDevices utils datasets methods base Other Packages: tidylog_1.0.2 ggplot2_3.4.2 procs_1.0.3 reporter_1.4.1 libr_1.2.8 fmtr_1.5.9 logr_1.3.4 common_1.0.8 sassy_1.1.0 Log Start Time: 2023-09-06 20:23:58.614273 ========================================================================= ========================================================================= Prepare Data ========================================================================= Create libname for csv data # library 'sdtm': 7 items - attributes: csv not loaded - path: C:/Users/dbosa/AppData/Local/R/win-library/4.3/sassy/extdata - items: Name Extension Rows Cols Size LastModified 1 AE csv 150 27 88.5 Kb 2023-08-07 17:51:40 2 DM csv 87 24 45.5 Kb 2023-08-07 17:51:40 3 DS csv 174 9 34.1 Kb 2023-08-07 17:51:40 4 EX csv 84 11 26.4 Kb 2023-08-07 17:51:40 5 IE csv 2 14 13.4 Kb 2023-08-07 17:51:40 6 SV csv 685 10 70.3 Kb 2023-08-07 17:51:40 7 VS csv 3358 17 467.4 Kb 2023-08-07 17:51:40 Perform joins and basic filters datastep: columns decreased from 24 to 8 # A tibble: 3,112 × 8 USUBJID ARMCD ARM VSTESTCD VSTEST VSORRES VISITNUM VISIT <chr> <chr> <chr> <chr> <chr> <dbl> <dbl> <chr> 1 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 78 0 SCREENING 2 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 76 1 DAY 1 3 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 66 2 WEEK 2 4 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 84 4 WEEK 4 5 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 68 6 WEEK 6 6 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 80 8 WEEK 8 7 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 70 12 WEEK 12 8 ABC-01-049 4 ARM D DIABP Diastolic Blood Pressure 70 16 WEEK 16 9 ABC-01-049 4 ARM D PULSE Pulse Rate 92 0 SCREENING 10 ABC-01-049 4 ARM D PULSE Pulse Rate 84 1 DAY 1 # ℹ 3,102 more rows # ℹ Use `print(n = ...)` to see more rows Change VISIT to factor so it sorts properly Group and summarize proc_means: input data set 3112 rows and 8 columns class: ARM VSTEST VISITNUM VISIT var: VSORRES stats: mean view: TRUE output: 1 datasets CLASS1 CLASS2 CLASS3 CLASS4 VAR MEAN 1 ARM A Diastolic Blood Pressure 1 DAY 1 VSORRES 76.47368 2 ARM A Diastolic Blood Pressure 12 WEEK 12 VSORRES 78.36842 3 ARM A Diastolic Blood Pressure 16 WEEK 16 VSORRES 77.26316 4 ARM A Diastolic Blood Pressure 2 WEEK 2 VSORRES 77.65000 5 ARM A Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.70000 6 ARM A Diastolic Blood Pressure 6 WEEK 6 VSORRES 74.36842 7 ARM A Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.05263 8 ARM A Pulse Rate 1 DAY 1 VSORRES 72.57895 9 ARM A Pulse Rate 12 WEEK 12 VSORRES 75.68421 10 ARM A Pulse Rate 16 WEEK 16 VSORRES 76.26316 11 ARM A Pulse Rate 2 WEEK 2 VSORRES 73.35000 12 ARM A Pulse Rate 4 WEEK 4 VSORRES 75.85000 13 ARM A Pulse Rate 6 WEEK 6 VSORRES 73.47368 14 ARM A Pulse Rate 8 WEEK 8 VSORRES 73.21053 15 ARM A Respiratory Rate 1 DAY 1 VSORRES 16.31579 16 ARM A Respiratory Rate 12 WEEK 12 VSORRES 16.42105 17 ARM A Respiratory Rate 16 WEEK 16 VSORRES 15.05263 18 ARM A Respiratory Rate 2 WEEK 2 VSORRES 15.40000 19 ARM A Respiratory Rate 4 WEEK 4 VSORRES 15.60000 20 ARM A Respiratory Rate 6 WEEK 6 VSORRES 17.15789 21 ARM A Respiratory Rate 8 WEEK 8 VSORRES 15.42105 22 ARM A Systolic Blood Pressure 1 DAY 1 VSORRES 127.52632 23 ARM A Systolic Blood Pressure 12 WEEK 12 VSORRES 128.31579 24 ARM A Systolic Blood Pressure 16 WEEK 16 VSORRES 132.05263 25 ARM A Systolic Blood Pressure 2 WEEK 2 VSORRES 129.45000 26 ARM A Systolic Blood Pressure 4 WEEK 4 VSORRES 132.25000 27 ARM A Systolic Blood Pressure 6 WEEK 6 VSORRES 130.05263 28 ARM A Systolic Blood Pressure 8 WEEK 8 VSORRES 131.00000 29 ARM A Temperature 1 DAY 1 VSORRES 36.52105 30 ARM A Temperature 12 WEEK 12 VSORRES 36.46316 31 ARM A Temperature 16 WEEK 16 VSORRES 36.43158 32 ARM A Temperature 2 WEEK 2 VSORRES 36.48947 33 ARM A Temperature 4 WEEK 4 VSORRES 36.37000 34 ARM A Temperature 6 WEEK 6 VSORRES 36.47368 35 ARM A Temperature 8 WEEK 8 VSORRES 36.52105 36 ARM B Diastolic Blood Pressure 1 DAY 1 VSORRES 78.23810 37 ARM B Diastolic Blood Pressure 12 WEEK 12 VSORRES 78.16667 38 ARM B Diastolic Blood Pressure 16 WEEK 16 VSORRES 78.47059 39 ARM B Diastolic Blood Pressure 2 WEEK 2 VSORRES 76.15000 40 ARM B Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.45000 41 ARM B Diastolic Blood Pressure 6 WEEK 6 VSORRES 79.33333 42 ARM B Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.33333 43 ARM B Pulse Rate 1 DAY 1 VSORRES 71.52381 44 ARM B Pulse Rate 12 WEEK 12 VSORRES 73.55556 45 ARM B Pulse Rate 16 WEEK 16 VSORRES 73.29412 46 ARM B Pulse Rate 2 WEEK 2 VSORRES 69.85000 47 ARM B Pulse Rate 4 WEEK 4 VSORRES 72.80000 48 ARM B Pulse Rate 6 WEEK 6 VSORRES 77.94444 49 ARM B Pulse Rate 8 WEEK 8 VSORRES 74.77778 50 ARM B Respiratory Rate 1 DAY 1 VSORRES 15.80952 51 ARM B Respiratory Rate 12 WEEK 12 VSORRES 15.55556 52 ARM B Respiratory Rate 16 WEEK 16 VSORRES 15.29412 53 ARM B Respiratory Rate 2 WEEK 2 VSORRES 16.45000 54 ARM B Respiratory Rate 4 WEEK 4 VSORRES 15.30000 55 ARM B Respiratory Rate 6 WEEK 6 VSORRES 15.38889 56 ARM B Respiratory Rate 8 WEEK 8 VSORRES 15.22222 57 ARM B Systolic Blood Pressure 1 DAY 1 VSORRES 127.47619 58 ARM B Systolic Blood Pressure 12 WEEK 12 VSORRES 129.66667 59 ARM B Systolic Blood Pressure 16 WEEK 16 VSORRES 128.88235 60 ARM B Systolic Blood Pressure 2 WEEK 2 VSORRES 124.00000 61 ARM B Systolic Blood Pressure 4 WEEK 4 VSORRES 126.35000 62 ARM B Systolic Blood Pressure 6 WEEK 6 VSORRES 128.61111 63 ARM B Systolic Blood Pressure 8 WEEK 8 VSORRES 126.33333 64 ARM B Temperature 1 DAY 1 VSORRES 36.38095 65 ARM B Temperature 12 WEEK 12 VSORRES 36.43333 66 ARM B Temperature 16 WEEK 16 VSORRES 36.26471 67 ARM B Temperature 2 WEEK 2 VSORRES 36.26842 68 ARM B Temperature 4 WEEK 4 VSORRES 36.35000 69 ARM B Temperature 6 WEEK 6 VSORRES 36.31667 70 ARM B Temperature 8 WEEK 8 VSORRES 36.38889 71 ARM C Diastolic Blood Pressure 1 DAY 1 VSORRES 77.33333 72 ARM C Diastolic Blood Pressure 12 WEEK 12 VSORRES 75.75000 73 ARM C Diastolic Blood Pressure 16 WEEK 16 VSORRES 78.62500 74 ARM C Diastolic Blood Pressure 2 WEEK 2 VSORRES 76.50000 75 ARM C Diastolic Blood Pressure 4 WEEK 4 VSORRES 76.47059 76 ARM C Diastolic Blood Pressure 6 WEEK 6 VSORRES 76.58824 77 ARM C Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.52941 78 ARM C Pulse Rate 1 DAY 1 VSORRES 74.09524 79 ARM C Pulse Rate 12 WEEK 12 VSORRES 73.75000 80 ARM C Pulse Rate 16 WEEK 16 VSORRES 76.18750 81 ARM C Pulse Rate 2 WEEK 2 VSORRES 73.94444 82 ARM C Pulse Rate 4 WEEK 4 VSORRES 77.29412 83 ARM C Pulse Rate 6 WEEK 6 VSORRES 76.05882 84 ARM C Pulse Rate 8 WEEK 8 VSORRES 75.29412 85 ARM C Respiratory Rate 1 DAY 1 VSORRES 15.85714 86 ARM C Respiratory Rate 12 WEEK 12 VSORRES 14.93750 87 ARM C Respiratory Rate 16 WEEK 16 VSORRES 15.43750 88 ARM C Respiratory Rate 2 WEEK 2 VSORRES 15.27778 89 ARM C Respiratory Rate 4 WEEK 4 VSORRES 15.23529 90 ARM C Respiratory Rate 6 WEEK 6 VSORRES 16.11765 91 ARM C Respiratory Rate 8 WEEK 8 VSORRES 14.64706 92 ARM C Systolic Blood Pressure 1 DAY 1 VSORRES 123.90476 93 ARM C Systolic Blood Pressure 12 WEEK 12 VSORRES 120.06250 94 ARM C Systolic Blood Pressure 16 WEEK 16 VSORRES 122.62500 95 ARM C Systolic Blood Pressure 2 WEEK 2 VSORRES 123.05556 96 ARM C Systolic Blood Pressure 4 WEEK 4 VSORRES 123.52941 97 ARM C Systolic Blood Pressure 6 WEEK 6 VSORRES 121.94118 98 ARM C Systolic Blood Pressure 8 WEEK 8 VSORRES 125.00000 99 ARM C Temperature 1 DAY 1 VSORRES 36.42857 100 ARM C Temperature 12 WEEK 12 VSORRES 36.23750 101 ARM C Temperature 16 WEEK 16 VSORRES 36.42500 102 ARM C Temperature 2 WEEK 2 VSORRES 36.57778 103 ARM C Temperature 4 WEEK 4 VSORRES 36.25882 104 ARM C Temperature 6 WEEK 6 VSORRES 36.14118 105 ARM C Temperature 8 WEEK 8 VSORRES 36.26471 106 ARM D Diastolic Blood Pressure 1 DAY 1 VSORRES 76.63636 107 ARM D Diastolic Blood Pressure 12 WEEK 12 VSORRES 75.21053 108 ARM D Diastolic Blood Pressure 16 WEEK 16 VSORRES 75.57143 109 ARM D Diastolic Blood Pressure 2 WEEK 2 VSORRES 74.90909 110 ARM D Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.04762 111 ARM D Diastolic Blood Pressure 6 WEEK 6 VSORRES 76.60000 112 ARM D Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.90000 113 ARM D Pulse Rate 1 DAY 1 VSORRES 74.78261 114 ARM D Pulse Rate 12 WEEK 12 VSORRES 70.75000 115 ARM D Pulse Rate 16 WEEK 16 VSORRES 74.19048 116 ARM D Pulse Rate 2 WEEK 2 VSORRES 76.59091 117 ARM D Pulse Rate 4 WEEK 4 VSORRES 75.42857 118 ARM D Pulse Rate 6 WEEK 6 VSORRES 69.95000 119 ARM D Pulse Rate 8 WEEK 8 VSORRES 72.90000 120 ARM D Respiratory Rate 1 DAY 1 VSORRES 16.13043 121 ARM D Respiratory Rate 12 WEEK 12 VSORRES 15.20000 122 ARM D Respiratory Rate 16 WEEK 16 VSORRES 15.09524 123 ARM D Respiratory Rate 2 WEEK 2 VSORRES 16.36364 124 ARM D Respiratory Rate 4 WEEK 4 VSORRES 15.42857 125 ARM D Respiratory Rate 6 WEEK 6 VSORRES 15.45000 126 ARM D Respiratory Rate 8 WEEK 8 VSORRES 16.00000 127 ARM D Systolic Blood Pressure 1 DAY 1 VSORRES 127.54545 128 ARM D Systolic Blood Pressure 12 WEEK 12 VSORRES 124.52632 129 ARM D Systolic Blood Pressure 16 WEEK 16 VSORRES 129.57143 130 ARM D Systolic Blood Pressure 2 WEEK 2 VSORRES 123.45455 131 ARM D Systolic Blood Pressure 4 WEEK 4 VSORRES 128.52381 132 ARM D Systolic Blood Pressure 6 WEEK 6 VSORRES 122.85000 133 ARM D Systolic Blood Pressure 8 WEEK 8 VSORRES 129.40000 134 ARM D Temperature 1 DAY 1 VSORRES 36.50435 135 ARM D Temperature 12 WEEK 12 VSORRES 36.35000 136 ARM D Temperature 16 WEEK 16 VSORRES 36.30000 137 ARM D Temperature 2 WEEK 2 VSORRES 36.31818 138 ARM D Temperature 4 WEEK 4 VSORRES 36.19524 139 ARM D Temperature 6 WEEK 6 VSORRES 36.32000 140 ARM D Temperature 8 WEEK 8 VSORRES 36.28000 datastep: columns started with 6 and ended with 6 CLASS1 CLASS2 CLASS3 CLASS4 VAR MEAN 1 ARM A Diastolic Blood Pressure 1 DAY 1 VSORRES 76.47368 2 ARM A Diastolic Blood Pressure 12 WEEK 12 VSORRES 78.36842 3 ARM A Diastolic Blood Pressure 16 WEEK 16 VSORRES 77.26316 4 ARM A Diastolic Blood Pressure 2 WEEK 2 VSORRES 77.65000 5 ARM A Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.70000 6 ARM A Diastolic Blood Pressure 6 WEEK 6 VSORRES 74.36842 7 ARM A Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.05263 8 ARM A Pulse Rate 1 DAY 1 VSORRES 72.57895 9 ARM A Pulse Rate 12 WEEK 12 VSORRES 75.68421 10 ARM A Pulse Rate 16 WEEK 16 VSORRES 76.26316 11 ARM A Pulse Rate 2 WEEK 2 VSORRES 73.35000 12 ARM A Pulse Rate 4 WEEK 4 VSORRES 75.85000 13 ARM A Pulse Rate 6 WEEK 6 VSORRES 73.47368 14 ARM A Pulse Rate 8 WEEK 8 VSORRES 73.21053 15 ARM A Respiratory Rate 1 DAY 1 VSORRES 16.31579 16 ARM A Respiratory Rate 12 WEEK 12 VSORRES 16.42105 17 ARM A Respiratory Rate 16 WEEK 16 VSORRES 15.05263 18 ARM A Respiratory Rate 2 WEEK 2 VSORRES 15.40000 19 ARM A Respiratory Rate 4 WEEK 4 VSORRES 15.60000 20 ARM A Respiratory Rate 6 WEEK 6 VSORRES 17.15789 21 ARM A Respiratory Rate 8 WEEK 8 VSORRES 15.42105 22 ARM A Systolic Blood Pressure 1 DAY 1 VSORRES 127.52632 23 ARM A Systolic Blood Pressure 12 WEEK 12 VSORRES 128.31579 24 ARM A Systolic Blood Pressure 16 WEEK 16 VSORRES 132.05263 25 ARM A Systolic Blood Pressure 2 WEEK 2 VSORRES 129.45000 26 ARM A Systolic Blood Pressure 4 WEEK 4 VSORRES 132.25000 27 ARM A Systolic Blood Pressure 6 WEEK 6 VSORRES 130.05263 28 ARM A Systolic Blood Pressure 8 WEEK 8 VSORRES 131.00000 29 ARM A Temperature 1 DAY 1 VSORRES 36.52105 30 ARM A Temperature 12 WEEK 12 VSORRES 36.46316 31 ARM A Temperature 16 WEEK 16 VSORRES 36.43158 32 ARM A Temperature 2 WEEK 2 VSORRES 36.48947 33 ARM A Temperature 4 WEEK 4 VSORRES 36.37000 34 ARM A Temperature 6 WEEK 6 VSORRES 36.47368 35 ARM A Temperature 8 WEEK 8 VSORRES 36.52105 36 ARM B Diastolic Blood Pressure 1 DAY 1 VSORRES 78.23810 37 ARM B Diastolic Blood Pressure 12 WEEK 12 VSORRES 78.16667 38 ARM B Diastolic Blood Pressure 16 WEEK 16 VSORRES 78.47059 39 ARM B Diastolic Blood Pressure 2 WEEK 2 VSORRES 76.15000 40 ARM B Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.45000 41 ARM B Diastolic Blood Pressure 6 WEEK 6 VSORRES 79.33333 42 ARM B Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.33333 43 ARM B Pulse Rate 1 DAY 1 VSORRES 71.52381 44 ARM B Pulse Rate 12 WEEK 12 VSORRES 73.55556 45 ARM B Pulse Rate 16 WEEK 16 VSORRES 73.29412 46 ARM B Pulse Rate 2 WEEK 2 VSORRES 69.85000 47 ARM B Pulse Rate 4 WEEK 4 VSORRES 72.80000 48 ARM B Pulse Rate 6 WEEK 6 VSORRES 77.94444 49 ARM B Pulse Rate 8 WEEK 8 VSORRES 74.77778 50 ARM B Respiratory Rate 1 DAY 1 VSORRES 15.80952 51 ARM B Respiratory Rate 12 WEEK 12 VSORRES 15.55556 52 ARM B Respiratory Rate 16 WEEK 16 VSORRES 15.29412 53 ARM B Respiratory Rate 2 WEEK 2 VSORRES 16.45000 54 ARM B Respiratory Rate 4 WEEK 4 VSORRES 15.30000 55 ARM B Respiratory Rate 6 WEEK 6 VSORRES 15.38889 56 ARM B Respiratory Rate 8 WEEK 8 VSORRES 15.22222 57 ARM B Systolic Blood Pressure 1 DAY 1 VSORRES 127.47619 58 ARM B Systolic Blood Pressure 12 WEEK 12 VSORRES 129.66667 59 ARM B Systolic Blood Pressure 16 WEEK 16 VSORRES 128.88235 60 ARM B Systolic Blood Pressure 2 WEEK 2 VSORRES 124.00000 61 ARM B Systolic Blood Pressure 4 WEEK 4 VSORRES 126.35000 62 ARM B Systolic Blood Pressure 6 WEEK 6 VSORRES 128.61111 63 ARM B Systolic Blood Pressure 8 WEEK 8 VSORRES 126.33333 64 ARM B Temperature 1 DAY 1 VSORRES 36.38095 65 ARM B Temperature 12 WEEK 12 VSORRES 36.43333 66 ARM B Temperature 16 WEEK 16 VSORRES 36.26471 67 ARM B Temperature 2 WEEK 2 VSORRES 36.26842 68 ARM B Temperature 4 WEEK 4 VSORRES 36.35000 69 ARM B Temperature 6 WEEK 6 VSORRES 36.31667 70 ARM B Temperature 8 WEEK 8 VSORRES 36.38889 71 ARM C Diastolic Blood Pressure 1 DAY 1 VSORRES 77.33333 72 ARM C Diastolic Blood Pressure 12 WEEK 12 VSORRES 75.75000 73 ARM C Diastolic Blood Pressure 16 WEEK 16 VSORRES 78.62500 74 ARM C Diastolic Blood Pressure 2 WEEK 2 VSORRES 76.50000 75 ARM C Diastolic Blood Pressure 4 WEEK 4 VSORRES 76.47059 76 ARM C Diastolic Blood Pressure 6 WEEK 6 VSORRES 76.58824 77 ARM C Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.52941 78 ARM C Pulse Rate 1 DAY 1 VSORRES 74.09524 79 ARM C Pulse Rate 12 WEEK 12 VSORRES 73.75000 80 ARM C Pulse Rate 16 WEEK 16 VSORRES 76.18750 81 ARM C Pulse Rate 2 WEEK 2 VSORRES 73.94444 82 ARM C Pulse Rate 4 WEEK 4 VSORRES 77.29412 83 ARM C Pulse Rate 6 WEEK 6 VSORRES 76.05882 84 ARM C Pulse Rate 8 WEEK 8 VSORRES 75.29412 85 ARM C Respiratory Rate 1 DAY 1 VSORRES 15.85714 86 ARM C Respiratory Rate 12 WEEK 12 VSORRES 14.93750 87 ARM C Respiratory Rate 16 WEEK 16 VSORRES 15.43750 88 ARM C Respiratory Rate 2 WEEK 2 VSORRES 15.27778 89 ARM C Respiratory Rate 4 WEEK 4 VSORRES 15.23529 90 ARM C Respiratory Rate 6 WEEK 6 VSORRES 16.11765 91 ARM C Respiratory Rate 8 WEEK 8 VSORRES 14.64706 92 ARM C Systolic Blood Pressure 1 DAY 1 VSORRES 123.90476 93 ARM C Systolic Blood Pressure 12 WEEK 12 VSORRES 120.06250 94 ARM C Systolic Blood Pressure 16 WEEK 16 VSORRES 122.62500 95 ARM C Systolic Blood Pressure 2 WEEK 2 VSORRES 123.05556 96 ARM C Systolic Blood Pressure 4 WEEK 4 VSORRES 123.52941 97 ARM C Systolic Blood Pressure 6 WEEK 6 VSORRES 121.94118 98 ARM C Systolic Blood Pressure 8 WEEK 8 VSORRES 125.00000 99 ARM C Temperature 1 DAY 1 VSORRES 36.42857 100 ARM C Temperature 12 WEEK 12 VSORRES 36.23750 101 ARM C Temperature 16 WEEK 16 VSORRES 36.42500 102 ARM C Temperature 2 WEEK 2 VSORRES 36.57778 103 ARM C Temperature 4 WEEK 4 VSORRES 36.25882 104 ARM C Temperature 6 WEEK 6 VSORRES 36.14118 105 ARM C Temperature 8 WEEK 8 VSORRES 36.26471 106 ARM D Diastolic Blood Pressure 1 DAY 1 VSORRES 76.63636 107 ARM D Diastolic Blood Pressure 12 WEEK 12 VSORRES 75.21053 108 ARM D Diastolic Blood Pressure 16 WEEK 16 VSORRES 75.57143 109 ARM D Diastolic Blood Pressure 2 WEEK 2 VSORRES 74.90909 110 ARM D Diastolic Blood Pressure 4 WEEK 4 VSORRES 78.04762 111 ARM D Diastolic Blood Pressure 6 WEEK 6 VSORRES 76.60000 112 ARM D Diastolic Blood Pressure 8 WEEK 8 VSORRES 77.90000 113 ARM D Pulse Rate 1 DAY 1 VSORRES 74.78261 114 ARM D Pulse Rate 12 WEEK 12 VSORRES 70.75000 115 ARM D Pulse Rate 16 WEEK 16 VSORRES 74.19048 116 ARM D Pulse Rate 2 WEEK 2 VSORRES 76.59091 117 ARM D Pulse Rate 4 WEEK 4 VSORRES 75.42857 118 ARM D Pulse Rate 6 WEEK 6 VSORRES 69.95000 119 ARM D Pulse Rate 8 WEEK 8 VSORRES 72.90000 120 ARM D Respiratory Rate 1 DAY 1 VSORRES 16.13043 121 ARM D Respiratory Rate 12 WEEK 12 VSORRES 15.20000 122 ARM D Respiratory Rate 16 WEEK 16 VSORRES 15.09524 123 ARM D Respiratory Rate 2 WEEK 2 VSORRES 16.36364 124 ARM D Respiratory Rate 4 WEEK 4 VSORRES 15.42857 125 ARM D Respiratory Rate 6 WEEK 6 VSORRES 15.45000 126 ARM D Respiratory Rate 8 WEEK 8 VSORRES 16.00000 127 ARM D Systolic Blood Pressure 1 DAY 1 VSORRES 127.54545 128 ARM D Systolic Blood Pressure 12 WEEK 12 VSORRES 124.52632 129 ARM D Systolic Blood Pressure 16 WEEK 16 VSORRES 129.57143 130 ARM D Systolic Blood Pressure 2 WEEK 2 VSORRES 123.45455 131 ARM D Systolic Blood Pressure 4 WEEK 4 VSORRES 128.52381 132 ARM D Systolic Blood Pressure 6 WEEK 6 VSORRES 122.85000 133 ARM D Systolic Blood Pressure 8 WEEK 8 VSORRES 129.40000 134 ARM D Temperature 1 DAY 1 VSORRES 36.50435 135 ARM D Temperature 12 WEEK 12 VSORRES 36.35000 136 ARM D Temperature 16 WEEK 16 VSORRES 36.30000 137 ARM D Temperature 2 WEEK 2 VSORRES 36.31818 138 ARM D Temperature 4 WEEK 4 VSORRES 36.19524 139 ARM D Temperature 6 WEEK 6 VSORRES 36.32000 140 ARM D Temperature 8 WEEK 8 VSORRES 36.28000 Rename variables for clarity ========================================================================= Create plots and print report ========================================================================= Create plot Construct output path Define report object Write report to file system # A report specification: 5 pages - file_path: 'C:\Users\dbosa\AppData\Local\Temp\Rtmpo1naKK/output/example6.rtf' - output_type: RTF - units: inches - orientation: landscape - margins: top 1 bottom 1 left 1 right 1 - line size/count: 9/36 - page by: VSTEST - page_header: left=Sponsor: Company right=Study: ABC - title 1: 'Figure 1.0' - title 2: 'Vital Signs Change from Baseline' - title 3: 'Safety Population' - footnote 1: 'R Program: VS_Figure.R' - page_footer: left=Date Produced: 06Sep23 20:24 center= right=Page [pg] of [tpg] - content: # A plot specification: - data: 140 rows, 6 cols - layers: 2 - height: 4.5 - width: 9 Close libname Close log ========================================================================= Log End Time: 2023-09-06 20:24:10.852245 Log Elapsed Time: 0 00:00:12 =========================================================================
Next: Example 7: Survival Analysis
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