Description Usage Arguments Examples
Plot the simulations time course separately.
1 2 3 4 | plot_sep_sims(inputdir, outputdir, model, exp_dataset,
plot_exp_dataset = FALSE, exp_dataset_alpha = 1, xaxis_label = "",
yaxis_label = "", column_to_read = "X1", yaxis.min = NULL,
yaxis.max = NULL)
|
inputdir |
the input directory containing the time course files |
outputdir |
the output directory |
model |
the model name |
exp_dataset |
a full path file containing the experimental data. |
plot_exp_dataset |
TRUE if the experimental data should also be plotted |
exp_dataset_alpha |
the alpha level for the data set |
xaxis_label |
the label for the x axis (e.g. Time (min)) |
yaxis_label |
the label for the y axis (e.g. Level (a.u.)) |
column_to_read |
the name of the column to process |
yaxis.min |
the lower limit for the y axis |
yaxis.max |
the upper limit for the y axis |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | data(insulin_receptor_IR_beta_pY1146)
data(insulin_receptor_exp_dataset)
dir.create(file.path("sim_datasets_sum"))
write.table(insulin_receptor_IR_beta_pY1146,
file=file.path("sim_datasets_sum","insulin_receptor_IR_beta_pY1146.csv"),
row.names=FALSE)
write.table(insulin_receptor_exp_dataset,
file="insulin_receptor_exp_dataset.csv",
row.names=FALSE)
plot_sep_sims(inputdir="sim_datasets_sum",
outputdir="sim_plots",
model="insulin_receptor",
exp_dataset="insulin_receptor_exp_dataset.csv",
plot_exp_dataset=TRUE,
exp_dataset_alpha=1.0,
xaxis_label="Time [m]",
yaxis_label="Level [a.u.]",
column_to_read='IR_beta_pY1146',
yaxis.min=NULL,
yaxis.max=NULL)
|
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