Description Usage Arguments Examples
Plot model single parameter scan time courses
1 2 3 | plot_single_param_scan_data(model, inhibition_only, inputdir, outputdir, run,
percent_levels = TRUE, min_level = 0, max_level = 100,
levels_number = 10, xaxis_label = "", yaxis_label = "")
|
model |
The model name |
inhibition_only |
true if the scanning only decreases the variable amount (inhibition only) |
inputdir |
the input directory containing the simulated data |
outputdir |
the output directory that will contain the simulated plots |
run |
the simulation number |
percent_levels |
true if scanning levels are in percent (default TRUE) |
min_level |
the minimum level (default: 0) |
max_level |
the maximum level (default: 100) |
levels_number |
the number of levels (default: 10) |
xaxis_label |
the label for the x axis (e.g. Time (min)) |
yaxis_label |
the label for the y axis (e.g. Level (a.u.)) |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 | data(insulin_receptor_ps1_l0)
data(insulin_receptor_ps1_l1)
data(insulin_receptor_ps1_l3)
data(insulin_receptor_ps1_l4)
data(insulin_receptor_ps1_l6)
data(insulin_receptor_ps1_l8)
data(insulin_receptor_ps1_l9)
data(insulin_receptor_ps1_l11)
data(insulin_receptor_ps1_l13)
data(insulin_receptor_ps1_l14)
data(insulin_receptor_ps1_l16)
dir.create(file.path("ps1_datasets"))
write.table(insulin_receptor_ps1_l0,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_0.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l1,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_1.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l3,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_3.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l4,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_4.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l6,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_6.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l8,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_8.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l9,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_9.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l11,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_11.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l13,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_13.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l14,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_14.csv"),
row.names=FALSE)
write.table(insulin_receptor_ps1_l16,
file=file.path("ps1_datasets",
"insulin_receptor_scan_IR_beta__rep_1__level_16.csv"),
row.names=FALSE)
plot_single_param_scan_data(
model="insulin_receptor_scan_IR_beta",
inhibition_only=FALSE,
inputdir="ps1_datasets",
outputdir="ps1_plots",
run=1,
percent_levels=TRUE,
min_level=0,
max_level=250,
levels_number=10,
xaxis_label="Time [m]",
yaxis_label="Level [a.u.]")
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