summarise_data: Summarise the model simulation repeats in a single file.

In sbpiper: Data Analysis Functions for 'SBpipe' Package

Description

Summarise the model simulation repeats in a single file.

Usage

summarise_data(inputdir, model, outputfile, column_to_read = "X1")

Arguments

inputdir	the input directory containing the time course files
model	the model name
outputfile	the file to store the simulated repeats
column_to_read	the name of the column to process

Examples

data(insulin_receptor_1)
data(insulin_receptor_2)
data(insulin_receptor_3)
dir.create(file.path("sim_datasets"))
dir.create(file.path("sim_datasets_sum"))
write.table(insulin_receptor_1, 
            file=file.path("sim_datasets","insulin_receptor_1.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_2, 
            file=file.path("sim_datasets","insulin_receptor_2.csv"), 
            row.names=FALSE)
write.table(insulin_receptor_3, 
            file=file.path("sim_datasets","insulin_receptor_3.csv"), 
            row.names=FALSE)
summarise_data(inputdir="sim_datasets", 
               model="insulin_receptor", 
               outputfile=file.path("sim_datasets_sum", 
                                    "insulin_receptor_IR_beta_pY1146.csv"), 
               column_to_read="IR_beta_pY1146")

sbpiper documentation built on May 2, 2019, 8:53 a.m.