scdeco.pg.noxc: ZENCO fitting function when no secondary covariate is...

In scDECO: Estimating Dynamic Correlation

ZENCO fitting function when no secondary covariate is provided

Description

ZENCO fitting function when no secondary covariate is provided

Usage

scdeco.pg.noxc(
  dat,
  b0,
  b1,
  adapt_iter = 10000,
  update_iter = 5000,
  coda_iter = 50000,
  coda_thin = 20,
  coda_burnin = 10000
)

Arguments

dat	matrix containing expression values as first two columns and covariate as third column
b0	intercept of zinf parameter
b1	slope of zinf parameter
adapt_iter	number of adaptation iterations in the jags.model function
update_iter	update iterations in the update function
coda_iter	number of iterations for the coda.sample function
coda_thin	how much to thin the resulting MCMC output
coda_burnin	how many iterations to burn before beginning coda sample collection

Value

MCMC samples that have been adapted, burned, and thinned

scDECO documentation built on April 12, 2025, 2:11 a.m.