Files in scMappR

Single Cell Mapper

README.md R/gsva_cellIdentify.R R/toNum.R R/scMappR_and_pathway_analysis.R R/coEnrich.R R/tissue_scMappR_custom.R R/cellmarker_enrich.R R/pathway_enrich_internal.R R/cwFoldChange_evaluate.R R/topgenes_extract.R R/extract_genes_cell.R R/make_TF_barplot.R R/plotBP.R R/deconvolute_and_contextualize.R R/PBMC_example.R R/process_from_count.R R/two_method_pathway_enrichment.R R/DeconRNAseq_CRAN.R R/tochr.R R/scMappR_tissues.R R/tissue_scMappR_internal.R R/get_signature_matrices.R R/process_dgTMatrix_lists.R R/generes_to_heatmap.R R/gmt.R R/tissue_by_celltype_enirchment.R R/POA_example.R R/single_gene_preferences.R R/heatmap_generation.R R/seurat_to_generes.R R/sm.R R/gProfiler_cellWeighted_Foldchange.R R/get_gene_symbol.R R/compare_deconvolution_methods.R R/human_mouse_ct_marker_enrich.R inst/doc/scMappR_Vignette.Rmd inst/doc/scMappR_Vignette.R tests/testthat.R tests/testthat/test_tissue_scMappR_custom.R tests/testthat/test_scMappR_and_pathway_analysis.R vignettes/scMappR_Vignette.Rmd man/gProfiler_cellWeighted_Foldchange.Rd man/toNum.Rd man/tissue_by_celltype_enrichment.Rd man/DeconRNAseq_CRAN.Rd man/generes_to_heatmap.Rd man/gmt.Rd man/plotBP.Rd man/make_TF_barplot.Rd man/PBMC_example.Rd man/tissue_scMappR_internal.Rd man/seurat_to_generes.Rd man/scMappR_tissues.Rd man/heatmap_generation.Rd man/topgenes_extract.Rd man/two_method_pathway_enrichment.Rd man/cellmarker_enrich.Rd man/tissue_scMappR_custom.Rd man/get_signature_matrices.Rd man/get_gene_symbol.Rd man/gsva_cellIdentify.Rd man/cwFoldChange_evaluate.Rd man/extract_genes_cell.Rd man/compare_deconvolution_methods.Rd man/coEnrich.Rd man/single_gene_preferences.Rd man/sm.Rd man/human_mouse_ct_marker_enrich.Rd man/deconvolute_and_contextualize.Rd man/scMappR_and_pathway_analysis.Rd man/tochr.Rd man/POA_example.Rd man/process_dgTMatrix_lists.Rd man/process_from_count.Rd man/pathway_enrich_internal.Rd